Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g0677 ATGGCTCTCGGACTCGAAATCACGGAGCTTAGGTTGGGTCTTCCCGGCCGCGGCGGGGATGATGATCAGAACAAGAGTGCTACTGAGATGACCAACAAGAAGAGGGTGTTCTCGGAGATTGGCCATGTTGACGGTGGTTGCGGTGGTGCTGTTGGTGGTGGTGGTGGTGAGGATGAGAATAGCTGCTCTGGCGACAGGAAGACACCGGCAAAGACCCTGGTTGTGGGGTGGCCGCCGGTGGGGTCGTACCGTAGGAGGAATAGCATGAGTGAACCCAAAATTTACGTGAAGGTTAGTATGGATGGAGCTCCTTTCTTGAGAAAGGTTGATTTGGGTTTGCAAAAGGGCTACTCTGAGTTAGCTTCAGCCTTGGAGAAGCTCTTTGATTGCCATGGAATCGGAGAGGCATTGAAGGGAGCGGACAATTCTGAAGTCGTTCCCATTTATGAGGACAGGGATGGTGACTGGATGCTTGTTGGAGATGTCCCTTGGGAAATGTTTATTGAGTCATGCAAGAGGCTGAGGATCATGAAGAGATCGGAGGCAAAAGGGTTTGATCTGCAGGCAAAAGGTTCTTCGAAGGGCAAAAAGAAGTGA 597 0.5126 MALGLEITELRLGLPGRGGDDDQNKSATEMTNKKRVFSEIGHVDGGCGGAVGGGGGEDENSCSGDRKTPAKTLVVGWPPVGSYRRRNSMSEPKIYVKVSMDGAPFLRKVDLGLQKGYSELASALEKLFDCHGIGEALKGADNSEVVPIYEDRDGDWMLVGDVPWEMFIESCKRLRIMKRSEAKGFDLQAKGSSKGKKK 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g0677 198 MobiDBLite consensus disorder prediction 15 29 - -
Acco07g0677 198 ProSiteProfiles PB1 domain profile. 93 181 IPR000270 GO:0005515
Acco07g0677 198 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 183 IPR003311 GO:0005634|GO:0006355
Acco07g0677 198 Pfam AUX/IAA family 66 184 IPR033389 -
Acco07g0677 198 SUPERFAMILY CAD & PB1 domains 87 178 - -
Acco07g0677 198 MobiDBLite consensus disorder prediction 12 32 - -
Acco07g0677 198 Gene3D - 88 191 - -
Acco07g0677 198 FunFam Auxin-responsive protein 88 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g0677 Acco-ChrAcco07 8212344 8214390 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco07g0677 78 183 B3 DNA Binding Superfamily AT4G23980 40.741 2.75e-14 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Acco07g0677 AUX_IAA 5.3e-43 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco07g0677 07 8212344 8214390 Acco09g1393 09 29362303 29366014 CCT