Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g0569 ATGTCTAAACCATTAGAACATGATTACATAGGCTTAGCAGCGGCATCAGGGAAACCTTCCATGGAAAAACACACTGAGAAAATATCTTCTCCTTCTTCTGCTGCTTCGTCTACTCTTTCTTCTGAGAAAGAAAATAGCTCTTCTCTGAATTTCAAAGAGACTGAGCTCAGGCTTGGGCTTCCTGGTACTGATTCTCCTCCTCCTCCTCCTGAGAGGAAATCTGGAAGTGGGATTTCTCTTTTCGGCAAGGATTTGCAGAGTAACCGCAATAAGGCTGATACTAATGCTCATAATGGGTTCTCTTCTTCTTCCCCTTTGAAGAACAACAACGTGGCTAGAGCTAAGAGGGTTTTTTCTGACGCCATTGATGGGTCTTCTGGGAAATGGGGTTTCTCTGTGAGTGACAAGAAAATTGGGTCTGAAGCTGATTTGGGAAAAGGAACTTCTTTTGTGAAGCCTCCTCTTGTTGCTGCAGAAGGTTCTGCTAATTATGAACAAAAGAGCGTTAAAGATGGTGGAATAGTTCAAGAGAAGAAGAAACCTCAGGTTTCTTCTGTTGCTGCTACTAATGAACATGGAAGTGCTCCTCCTGCTGCTAAGGCACAGGTTGTGGGATGGCCACCAATTCGATCTTTTCGAAAGAACAGCATGGCCTCTAATTCGACAAAGAACAATGATGAAGGTGAAGGTGGTAAAGCAGGATATGGCTGTCTCTATGTGAAAGTCAGCATGGATGGTGCCCCTTATCTCAGAAAGGTTGATCTCAAAACCTTCAGCAACTATGTGGATCTTTCTTCAGCTCTTGAGAAAATGTTCAGCTGCTTTACCATTGGTCAATGCAGTTCTGGAGGACTTGCTGTGAAAGATGGCCTAAGTGAGAGCTCTCTGAGGGATCTTCTCCATGGTTCTGAATATGTTCTTACTTATGAAGATAGAGATGGAGATTGGATGCTTGTTGGTGATGTTCCCTGGGAGATGTTCACTGACTCATGTAAGAGATTAAGGATCATGAAAGGTTCTGAGGCGATTGGGCTCGCTCCAAGGGTGGTGGAAAAATCCAGGAGCCAAAGCTAA 1074 0.4404 MSKPLEHDYIGLAAASGKPSMEKHTEKISSPSSAASSTLSSEKENSSSLNFKETELRLGLPGTDSPPPPPERKSGSGISLFGKDLQSNRNKADTNAHNGFSSSSPLKNNNVARAKRVFSDAIDGSSGKWGFSVSDKKIGSEADLGKGTSFVKPPLVAAEGSANYEQKSVKDGGIVQEKKKPQVSSVAATNEHGSAPPAAKAQVVGWPPIRSFRKNSMASNSTKNNDEGEGGKAGYGCLYVKVSMDGAPYLRKVDLKTFSNYVDLSSALEKMFSCFTIGQCSSGGLAVKDGLSESSLRDLLHGSEYVLTYEDRDGDWMLVGDVPWEMFTDSCKRLRIMKGSEAIGLAPRVVEKSRSQS 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g0569 357 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 48 344 IPR003311 GO:0005634|GO:0006355
Acco07g0569 357 MobiDBLite consensus disorder prediction 1 111 - -
Acco07g0569 357 MobiDBLite consensus disorder prediction 26 53 - -
Acco07g0569 357 ProSiteProfiles PB1 domain profile. 237 339 IPR000270 GO:0005515
Acco07g0569 357 Pfam AUX/IAA family 53 348 IPR033389 -
Acco07g0569 357 FunFam Auxin-responsive protein 232 349 - -
Acco07g0569 357 Gene3D - 232 351 - -
Acco07g0569 357 MobiDBLite consensus disorder prediction 176 200 - -
Acco07g0569 357 MobiDBLite consensus disorder prediction 80 110 - -
Acco07g0569 357 SUPERFAMILY CAD & PB1 domains 237 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g0569 Acco-ChrAcco07 6826605 6829033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco07g0569 240 357 B3 DNA Binding Superfamily AT2G46530 33.051 6.06e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Acco07g0569 AUX_IAA 7.7e-90 CL0072