Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g0560 ATGACGAATCAAACCTCCTCCCCTGAAACTACCACTGCCAGTAACTCTCCCTCTTCCTCGTCGGAACTATCAAACCCCACGTCCGATTCTCAGACACAGAAAAATGAATCTCAGAGCACTTGCAGAGCCAAGAGAGCCAGAGACTCTTCCAACAAGCACCCATCCTACCATGGAGTCCGAATGCGAAGTTGGGGCAAATGGGTCTCTGAAATTCGAGAGCCTCGCAAGAAATCACGAATCTGGCTCGGTACTTTCGCCACTCCAGAAATGGCGGCTCGAGCCCATGACGTCGCCGCCCTGAGTATCAAGGGTGAATCCGCTGTACTCAACTTCCCCCACTTATCATCTCTGCTTCCTAGACCTGTGACACTCGACCCACGTGACATACAAGCCGCCGCCGCCGGAGCAGCCGCCATGGTGAAATTCGACCCCGCTCAGCCTTCGTCTTCGCCACCACCGGAAGAAGCAGAGTCTTCGGAGCTGAGTGAGATAGTGGAATTGCCCAACGTTGAAGAGAGCTTCGATTCAGTGGAGTCGTCGTCCACGAGCCGCGACTTTGTGTGGGTAGAGTCCATGGATTGTTGGCTGTATGATCCTCCATTAATGGGGTTACAGAAACAAGGCTTCTTTGACCAGTTTTATGGAGGAGGAGAAGAAGAAAGCTTTGAGATTTCAATTTGGGATTGA 687 0.5211 MTNQTSSPETTTASNSPSSSSELSNPTSDSQTQKNESQSTCRAKRARDSSNKHPSYHGVRMRSWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALSIKGESAVLNFPHLSSLLPRPVTLDPRDIQAAAAGAAAMVKFDPAQPSSSPPPEEAESSELSEIVELPNVEESFDSVESSSTSRDFVWVESMDCWLYDPPLMGLQKQGFFDQFYGGGEEESFEISIWD 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g0560 228 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Acco07g0560 228 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Acco07g0560 228 SUPERFAMILY DNA-binding domain 55 113 IPR016177 GO:0003677
Acco07g0560 228 Pfam AP2 domain 54 104 IPR001471 GO:0003700|GO:0006355
Acco07g0560 228 MobiDBLite consensus disorder prediction 1 59 - -
Acco07g0560 228 FunFam Ethylene-responsive transcription factor 2 54 113 - -
Acco07g0560 228 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 30 174 - -
Acco07g0560 228 MobiDBLite consensus disorder prediction 40 55 - -
Acco07g0560 228 Gene3D AP2/ERF domain 55 113 IPR036955 GO:0003700|GO:0006355
Acco07g0560 228 MobiDBLite consensus disorder prediction 1 39 - -
Acco07g0560 228 CDD AP2 54 114 IPR001471 GO:0003700|GO:0006355
Acco07g0560 228 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700|GO:0006355
Acco07g0560 228 SMART rav1_2 55 118 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g0560 Acco-ChrAcco07 6747696 6748382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco07g0560 25 200 AP2-EREBP Transcription Factor Family AT5G11590 54.315 3.40e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco07g0560 AP2 2.1e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco07g0560 07 6747696 6748382 Acco07g0560 07 6747696 6748382 ECH