Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g0551 ATGCCTCAATACTTTGTCGGTGCCTACTTAGGCTCCGGAGGGGACCATTTCTCTCCGGAAAAGCGCCATTCCGACCAGAAGCCAACCACCGAGCCTTTTGCCGTCGACGACCTCCTTGACTTCTCCCATGCCGACGCTATCATGTCGGATTCTGCTTTCATTGATAATGTCGCCGGAAACTCCACCGACTCCTCCACCGGCACTGCTGTTGATAGCTGCAACTCCTTAATTTCCCGTGTCGATAATAACCGTTTCTCAGCCAACTTTGCTCCTCGTCCCTTCGGCGATCATCAGTTAGCCGGTGAACTCTGTGTGCCGTATGATGACATGGCGGACCTGGAATGGCTATCGAACTTCGTGGAAGACTCGTTCACCGGACAGGACGAGCTGAAAACACTCCACCTTCTATCCGGCGCCACCACCGCTTCCGCATTTGGCGCTAAACCTCAGACTCCAGAATCTTCCTCCTCTTCTGAAACCCTCCCGCCTTTCGCTCCCGATGCAGCTCGCAACGCCCCGTTTTTCCACCCGGAAACTCCATTGCCAGGCAAAGCTAGGAGCAAGCGTTCACGCGCCGCTCCTGGCGATTGGTCCACGCGCTCCCTCCATCTCGTAACAGCACCACCGCACAACAACCACTCGACCACGACGGAGGGCAAACCAGTGCACGCTAAGGCGACGACAGTGAAGAAGAGGGAGAGCTCAAATTCCGATTCCTCAGGTCGGAAATGCCTGCACTGTGCCACCGAGAAGACGCCGCAATGGCGCACTGGCCCAATGGGTCCGAAGACTCTGTGCAATGCTTGTGGAGTCCGATACAAGTCCGGGAGGCTGGTGCCGGAGTACCGCCCGGCGGCGAGCCCGACTTTTGTGTCGACGAAGCACTCGAATTCTCATAGGAAGGTCTTGGAGCTGAGGAGGCAGAGGGATCTGCAAACGCAGCAGCAGCAGCAACTGATGAGTCAAGCTTCCATTTTCGGCGTATCGAACGGAGGAGATGAGTTCTTGATCCATCACCATGGTGGGCCTGACTATAGGCATATCATGTAA 1050 0.56 MPQYFVGAYLGSGGDHFSPEKRHSDQKPTTEPFAVDDLLDFSHADAIMSDSAFIDNVAGNSTDSSTGTAVDSCNSLISRVDNNRFSANFAPRPFGDHQLAGELCVPYDDMADLEWLSNFVEDSFTGQDELKTLHLLSGATTASAFGAKPQTPESSSSSETLPPFAPDAARNAPFFHPETPLPGKARSKRSRAAPGDWSTRSLHLVTAPPHNNHSTTTEGKPVHAKATTVKKRESSNSDSSGRKCLHCATEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVSTKHSNSHRKVLELRRQRDLQTQQQQQLMSQASIFGVSNGGDEFLIHHHGGPDYRHIM 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g0551 349 MobiDBLite consensus disorder prediction 224 239 - -
Acco07g0551 349 ProSitePatterns GATA-type zinc finger domain. 244 269 IPR000679 GO:0006355|GO:0043565
Acco07g0551 349 MobiDBLite consensus disorder prediction 144 243 - -
Acco07g0551 349 Gene3D - 238 288 IPR013088 GO:0006355|GO:0008270
Acco07g0551 349 CDD ZnF_GATA 243 290 IPR000679 GO:0006355|GO:0043565
Acco07g0551 349 PIRSF Txn_fac_GATA_plant 18 330 IPR016679 GO:0003677|GO:0005634|GO:0045893
Acco07g0551 349 Pfam GATA zinc finger 244 277 IPR000679 GO:0006355|GO:0043565
Acco07g0551 349 PANTHER GATA TRANSCRIPTION FACTOR 26 317 - -
Acco07g0551 349 MobiDBLite consensus disorder prediction 144 162 - -
Acco07g0551 349 MobiDBLite consensus disorder prediction 204 222 - -
Acco07g0551 349 ProSiteProfiles GATA-type zinc finger domain profile. 238 274 IPR000679 GO:0006355|GO:0043565
Acco07g0551 349 FunFam GATA transcription factor 233 320 - -
Acco07g0551 349 SMART GATA_3 238 288 IPR000679 GO:0006355|GO:0043565
Acco07g0551 349 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 239 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g0551 Acco-ChrAcco07 6661167 6662453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco07g0551 31 349 C2C2-Gata Transcription Factor Family AT4G32890 44.648 1.21e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Acco07g0551 GATA 7.9e-15 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco07g0551 07 6661167 6662453 Acco07g0551 07 6661167 6662453 ECH