LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco07g0510	ATGGCAGGACATGGGCTTTTGGCATTCCTTCAACTTGCTGTGACTCTTTCAGTTCTTGTTCATTCCCAGAGTCAATCAGGATTCATCAGTATTGATTGTGGACTTGTGGATAAACCAAGCTACACAGATGAATGTACTTCCATCTATTACACTTCAGATGCCAACATCATATCCACTGGAATTATCTTGGAGCTCAGAGTTCTTGACAGTGATGCCTATCGTTTTAGCTCTCTGAACCTCTTGGCTCGGTATGATTTAGGGTTGCGGGATGCTGAATTGGTCAGATACCCAGATGACTCCTACAATCGAATATGGAGACCCGGTAACTCAGAAGACTGGAGACAGATAAATACCTTACTACATGTGGACCAAGGATTATCATCAACAACATCATCATATGGTTTAATAACTTATCCACCCTCCATTGTTATGAGAACAGCATCAACTCCAGCAAATGGAAGCAACAAAATGGAAGTTCATTTCCAGATTGGGAACAACGCATATTTCGCGCACTTGTACTTTGCTGAAATACAGAAACTCCAAGCAAATGAAATCAGAGAATTTAACATTTTTGTGAATGGAGAACTCTTCGGGGTTAATTTCAGTCCTTCATACCTTCAAACCATGAACATTGTAGCTATAGGAAATGGACCTTGGCTCAATATTTCGATCAATAAGACAGATAGATCAACTCTTCCTCCTCTTGTAAATGCCATTGAGGTGTATATGGACAAGAATCTGTCACAGCCTCAAACACAGCAAACAGATGGTATGTTCACTGGTTACAAGACCTTATCTTCTAGTAGATTAACTGGAAACATAGCTCCAGATGTATCCAATTTGAAGGATATTGAGTATTTAGACCTAGAAGGTAATCAGCTATCAGGAATAATTCCAACAAAGCTTATGGATAGGTCAAGCAATGGATTACTTAAACTCAGTTTTGGTGGAAATCCAAATCTTTGTTCTTCAGAAGATTCATGTAAGAGTGGTAGGGCAAAGCTCGTCATTCCATTAGTGTCATCACTAGCAGGAGCTTTCATACTACTGGCTGCCATGGCTGCCATAATTACTTTCTGCATTTACAGAAGAAAACAAAAAGGATATCTTCAATTTGAGGCAGAGGCAAAACTTGCTAAAGTTCACCATAAACACTTGAATTCTCTGATAGGATATTGTGACGATGGCACCAACGTTGCTCTAATCTATGAGTATATGGCTAATGGCGACTTAGCTAAGCATTTGTCAGAGAAAAATCTGAACATCTTGAACTGGAAACAACGGCTACAAATTGCAGTGGATGCTGCAGAAGGCTTGGAGTATCTGCATACTGGTTGTAAGTCAACAATTGTTCACAGAGATGTTAAATCCAAAAACATCTTACTGAATGAACATTTTCGGGGTAAAATAGCCGATTTTGGATTGTCAAAAATCTTTCCTGATGAAAATGATACTCATGTATATACTAGGATTGCTGGCACCCCAGGATACCTTGACCCTGCGTACAATATGTCAAACAAGTTGAATGAAAAAAGTGATGTATATAGCTTTGGGGTTGTTGTTCTTGAGATAGTTACAGGACAATCAGCCATATCAAAGACTGAAGAAAATACTCACATAGTCCAATGGGTTAACGTCATGCTTGCTGGAAGCAAGATTGATGATATTATGGATTCAAGATTAAAGGGAAACTTTGATACTGATTCTGCAACAAAAGCTTTGGATATTGCAATGGCCTGTGTGGAACCTTCTTCCCTGAGTAGGCCAACAATGAGTCAGGTAGTGATGCAATTGAGGCAATGTTTGGCTATGGAGACAGCTCGTGGAATTCACAGTCAAAATGATTTCTCATTTGGTGGAATTAGTGGAGAGAGTTCTCTGGCTAGATAG	1890	0.3947	MAGHGLLAFLQLAVTLSVLVHSQSQSGFISIDCGLVDKPSYTDECTSIYYTSDANIISTGIILELRVLDSDAYRFSSLNLLARYDLGLRDAELVRYPDDSYNRIWRPGNSEDWRQINTLLHVDQGLSSTTSSYGLITYPPSIVMRTASTPANGSNKMEVHFQIGNNAYFAHLYFAEIQKLQANEIREFNIFVNGELFGVNFSPSYLQTMNIVAIGNGPWLNISINKTDRSTLPPLVNAIEVYMDKNLSQPQTQQTDGMFTGYKTLSSSRLTGNIAPDVSNLKDIEYLDLEGNQLSGIIPTKLMDRSSNGLLKLSFGGNPNLCSSEDSCKSGRAKLVIPLVSSLAGAFILLAAMAAIITFCIYRRKQKGYLQFEAEAKLAKVHHKHLNSLIGYCDDGTNVALIYEYMANGDLAKHLSEKNLNILNWKQRLQIAVDAAEGLEYLHTGCKSTIVHRDVKSKNILLNEHFRGKIADFGLSKIFPDENDTHVYTRIAGTPGYLDPAYNMSNKLNEKSDVYSFGVVVLEIVTGQSAISKTEENTHIVQWVNVMLAGSKIDDIMDSRLKGNFDTDSATKALDIAMACVEPSSLSRPTMSQVVMQLRQCLAMETARGIHSQNDFSFGGISGESSLAR	629

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco07g0510	629	SMART	serkin_6	347	602	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco07g0510	629	Gene3D	Ribonuclease Inhibitor	255	330	IPR032675	-
	Acco07g0510	629	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	450	462	IPR008271	GO:0004672\|GO:0006468
	Acco07g0510	629	Pfam	Malectin-like domain	63	242	IPR024788	-
	Acco07g0510	629	SUPERFAMILY	Protein kinase-like (PK-like)	366	598	IPR011009	-
	Acco07g0510	629	Gene3D	Phosphorylase Kinase; domain 1	354	406	-	-
	Acco07g0510	629	Gene3D	Transferase(Phosphotransferase) domain 1	407	618	-	-
	Acco07g0510	629	FunFam	LRR receptor-like serine/threonine-protein kinase IOS1	406	610	-	-
	Acco07g0510	629	Gene3D	-	92	246	-	-
	Acco07g0510	629	Pfam	Protein tyrosine and serine/threonine kinase	370	598	IPR001245	GO:0004672\|GO:0006468
	Acco07g0510	629	PANTHER	OS07G0107800 PROTEIN-RELATED	264	361	-	-
	Acco07g0510	629	SUPERFAMILY	L domain-like	265	325	-	-
	Acco07g0510	629	ProSiteProfiles	Protein kinase domain profile.	300	602	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco07g0510	Acco-ChrAcco07	6055659	6064273	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco07g0510	63	608	Receptor kinase-like Gene Family	AT1G07560	36.536	1.51e-122	382

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-1	Acco07g0510		PK_Tyr_Ser-Thr	6.9e-37	CL0016