Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g0402 ATGGGAAATCAAAAGCACAAGTGGACCGCCGATGAAGAAGAAGCTTTGCTCGCGGGCATTAAGAAACATGGTCACGGCAAGTGGAAGAATATCCTCAAAGATCCCGAATTTGCCCGCTTTCTCACTCACCGTTCCAATATCGATCTTAAGGATAAATGGAGAAATTTAAATGTTAGTACTGCCACTCAAGGAGGATCTAAAGAAAAAGCTAAGAATGTAAAGATTAAGACTACGGAACCTGCTACACCTGCGGGCACGCAAAGCGCTTCTGTTGCTACTCCACTTCGTCGATGTGCATCTTCTGATGCCGTCACAGATGATTCTTCTCACAATGTACAGGATGTCAAACAAGCTCCACAGTACGATGCAATGATTTTTGAAGCCTTATCAACGTTGAGAGATTCCTATGGATCTGACCTTAATGATATTGTTAGCTTTATTGAGCAAAAGCATGAGGTTCCTCAAAATTACAGACGAGCAGTAGGAGCAAGGTTGAGAAAGCTTGTTGAACAACGAAAACTTGAAAAGGTACAAAATCATTACAGGATAAAGAGAACGACGACACCTGTGGAGACAAAACCACCTGCACCAAAACAAATCGATTCCAGGCCACGCCAATCACTGGCCTCAGGCATTACAGCATCTCATGAGTCGGTAATGGATGCAGTGGAGGTTGCAGCATGCAAAGTTGCTGAAGCAGAGCACAAGTCACATTGGGCTGCTGAAGCAATTAAGGAGGCAGAAAAATTATCCAAGTTGGCCGAAGATGCTGATGCAATGTTACAGCTAGCCAAAGAGATTTATGAGCAATGTTCACGGGGCGAAATCATTCTCTTGGCTTAA 843 0.4377 MGNQKHKWTADEEEALLAGIKKHGHGKWKNILKDPEFARFLTHRSNIDLKDKWRNLNVSTATQGGSKEKAKNVKIKTTEPATPAGTQSASVATPLRRCASSDAVTDDSSHNVQDVKQAPQYDAMIFEALSTLRDSYGSDLNDIVSFIEQKHEVPQNYRRAVGARLRKLVEQRKLEKVQNHYRIKRTTTPVETKPPAPKQIDSRPRQSLASGITASHESVMDAVEVAACKVAEAEHKSHWAAEAIKEAEKLSKLAEDADAMLQLAKEIYEQCSRGEIILLA 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g0402 280 Pfam Myb-like DNA-binding domain 6 56 IPR001005 -
Acco07g0402 280 Gene3D - 8 82 - -
Acco07g0402 280 MobiDBLite consensus disorder prediction 79 94 - -
Acco07g0402 280 CDD SANT_TRF 6 57 - -
Acco07g0402 280 PANTHER SINGLE MYB HISTONE 4 1 279 IPR044597 GO:0003691
Acco07g0402 280 Pfam linker histone H1 and H5 family 119 179 IPR005818 GO:0000786|GO:0003677|GO:0006334
Acco07g0402 280 MobiDBLite consensus disorder prediction 61 94 - -
Acco07g0402 280 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 117 185 IPR005818 GO:0000786|GO:0003677|GO:0006334
Acco07g0402 280 FunFam Telomere repeat-binding factor 1 2 58 - -
Acco07g0402 280 Gene3D - 114 200 IPR036388 -
Acco07g0402 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Acco07g0402 280 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
Acco07g0402 280 Coils Coil 240 260 - -
Acco07g0402 280 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Acco07g0402 280 SUPERFAMILY "Winged helix" DNA-binding domain 118 185 IPR036390 -
Acco07g0402 280 SMART sant 4 59 IPR001005 -
Acco07g0402 280 SMART h15plus2 115 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g0402 Acco-ChrAcco07 4787338 4790631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco07g0402 1 280 Single Myb Histone (SMH) Gene Family AT1G72740 48.973 4.31e-79 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Acco07g0402 Linker_histone 8.4e-08 CL0123