Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g0390 ATGGGAAATCAAAAGCACAAGTGGACCGCCGATGAAGAAGAAGCTTTGCTCGCCGGCATTAACAAGCATGGCCTCGGCAGGTGGAGGAAGATCCTCAAAGATCCCGAATTTGCCCGCCTTCTCACTCACCGATCCAATGTCGATCTTAAGGATAAATGGAGAAATTTAAAGGTTGGTACTCCTCCTCAAGGAGGATCTAGAGAACAAGCAAAGAATGTAACAATTAAGACTGCGGAAGCTGCTACACCTGCGGGCACGCAAAATGCTTCTGTTGCTACTCCACTTCATCAATGTGCTTCTTCTGATGCCGTCACAGATGATTCTTCTCACAATGTACAGGAGGTCAAACAAGCTCCACAGTACGATGCAATGATTTTTGAAGCCCTATCAACATTGAGAGATTCCAATGGATCTAACCTAAATGCTATTCTTAGCTTTATTGAGCAAAAGCAAGAGGTTCCTCAAAATTACAGACGAGCAATAGGTGCAATGTTGAGAAAGCTTGTCGATCAAGGAAAACTTGAAAAGATTGCTCCGCCTTGCCCCTGTTTGGTTACTCTGATCTTGGGTTTAGATTTCAATTTCTTGGTTATGTATGTTTTGGGTTTCTCAACTCTGCCCTCTCATGCAGGAGGTGTAGAATCTTATGATGCATTGGTGCTTGAGGCAGCTGCATGAAACGGGTTGGGAAAACTGGGAGAGGCTGCGTCACTGGAAGGGTTTGCGAGGACATTGCCAACACTGTTGGGTGGACAGAGCGCCTTCAGTGTTCAATTCGACTACACTCACGACTTCGGAGTTCCTGGAGCCTTCGTCATCAAAAACAATCTTTCTACCGAATTCTATCTGGTGAGCTTGACCCTTGATGATATCCCAAATCATGGATCCGTCCATTTTGTTTGCAACTCCTGGATCTACCCTGCCAACAGATACAGGAGCGATCGCATCTTCTTCGCCAACAAGGCGTATGTTCCGAGCAAAACACCTCCCGCTTTGGCCAAATACAGAGAACAAGAGCTTATTACTTTAAGAGGAGATGGATTCGCAGAGCTCCAGGAACACGATAGAGTCTATGATTATGCTACCTACAATGATTTGGGCAGGCCAGATCTCAGAAAGAGCCTCACCCGTCCTATTCTTGGAGGATCTTCCGAATATCCTTACCCTCGTAGAGTAAGAACTAGCAGGCCGCCCTCTAAATCAGATCCTAACACTGAGAGGCTTCTTCCTGGAGTTCAGAACTTTGATATCTATGTTCCAAGGGATGAGCGATTTGGTCATCTTAAGTTGTCGGACTTTCTGACCTATTTTCAGAAATCTATTTCTCAAGATTTGAGGCCATTGTTAGAATCGGTATCCAGTTTCATGTCCAATGGGTTCAACAGCTTTAGTGAAGTCCGCGAACTCTATGAAGGTGGATTTCATCTGCCTCAGGGTGTAGTTAAGAATATCAGCGAGAAAATGCCTATACCTATGCTCAAGGAACTCTTCCGAACTGATGGTGAACAAGCTCTCAGATATCCTACGCCTAAAGTTATTAAAGAAAATAAGTCTGGATGGATGACTGATGAAGAATTTGCAAGAGAAACGTTGGCTGGTGTGAATCCAGGTGTAATCCGGGCTCTCCAAGAGTTTCCCCCAAAGAGCACGCTGGATATTAGGGTCTACGGTGATCAAACGAGCAAGATAACCAAAGAGCAGCTGGAGCAAAATATGGGTGGAGTGACAGTAGTTGAGGCACTCGAATGCAGGAGATTGTTCATATTAGATCACCATGATGCATTCATGCCATATCTGAGGAAGATAAACGAAACTTCAAAAGAAGCTTATGCCACTAGGACGATCCTTTTCTTGAAGGAGGATGGGACTTTGAAGCCATTGGCTATTGAATTAGGTTTACCCCATCCTGATGGAGATAAATGCGGCTTTATAAGTAGTGTTGTCTTGCCTGCAGATCAAGGGGTTGAGGGTACCATCTGGCTATTAGCCAAAGCTTATGTGACTGTAAATGACTCTAGCTATCATCAACTTGTTAGCCACTGGCTACAAACTCATGCAGTTATTGAACCATTTATCATAGCGACTAACAGACAGCTCAGTGTTCTTCATCCTATTCATAAACTTCTCTATCCTCATTTCCGTGACAAGATGAATATAAATGCTCTTGCTCGTCAAGCCTTGATCAATGCAGATGGAATTATTGAGTTGTCATTCTTGTTCGGACAATACTCGATAGAGATGTCTTCCAAGGTTTACAAGAACTGGGTTTTCCCTGATCAAGCCCTACCCAAAGATCTTATCAAAAGAGGAATGGCTGTCGAGGATTCAGAATGTCCTTATGGGCTTCGCCTGGTGATAGAGGACTACCCTTTTGCGTTGGATGGACTTGAGATATGGGCTGCTATTAATGCATGGGTTCATGACTATGTTCACTGCTACTATGACAGCGATGAAGATGTTCAACAAGACTCTGAACTACAAGCTTGGTGGAAAGAAACCGTATTGATTGGTCACGGAGAGTTAAAAGATCAGCCTTGGTGGTTTAAGATGCAAACTCTTGCTGAGCTTATTGAAGCATGCACCATCATCATATGGACTTCTTCAGCCCTCCATGCAGCTGTCAATTTCGGGCAATATCCTTATGGAGGTTATATTGTAAACCGTCCAACTCTTAGCAGGAGGTTGCTTCCGGAAGAAGGTAGTCCAGAATATGAAGAGCTAAAGAAGAACCCAGAGAAAGCTTTGTTGAAGACAATGACACCAAAGTTGCAGACCCTTATGGACCTTTCAGTTATAGAAATCTTATCAAGGCACGCTTCTGATGAGGTGTATCTTGGGACAAGGGACAATCCTAACTGGACTTGTGATGTGAAGCCACTGGAAGCCTTCAAGAAGTTCGGGAAGAAGTTGGAAGAGATTGAGAAAAAACTGATAGAAAGGAAACAACACAGAGACCCTAAGAAACAGGTTGGGGCCAGTCAACATGCATTACACTCTTCTGTATCCCACAAGGGAGGAAGGACTGACCTGCAGAGGAATTCCAAATAG 3048 0.4413 MGNQKHKWTADEEEALLAGINKHGLGRWRKILKDPEFARLLTHRSNVDLKDKWRNLKVGTPPQGGSREQAKNVTIKTAEAATPAGTQNASVATPLHQCASSDAVTDDSSHNVQEVKQAPQYDAMIFEALSTLRDSNGSNLNAILSFIEQKQEVPQNYRRAIGAMLRKLVDQGKLEKIAPPCPCLVTLILGLDFNFLVMYVLGFSTLPSHAGGVESYDALVLEAAAXNGLGKLGEAASLEGFARTLPTLLGGQSAFSVQFDYTHDFGVPGAFVIKNNLSTEFYLVSLTLDDIPNHGSVHFVCNSWIYPANRYRSDRIFFANKAYVPSKTPPALAKYREQELITLRGDGFAELQEHDRVYDYATYNDLGRPDLRKSLTRPILGGSSEYPYPRRVRTSRPPSKSDPNTERLLPGVQNFDIYVPRDERFGHLKLSDFLTYFQKSISQDLRPLLESVSSFMSNGFNSFSEVRELYEGGFHLPQGVVKNISEKMPIPMLKELFRTDGEQALRYPTPKVIKENKSGWMTDEEFARETLAGVNPGVIRALQEFPPKSTLDIRVYGDQTSKITKEQLEQNMGGVTVVEALECRRLFILDHHDAFMPYLRKINETSKEAYATRTILFLKEDGTLKPLAIELGLPHPDGDKCGFISSVVLPADQGVEGTIWLLAKAYVTVNDSSYHQLVSHWLQTHAVIEPFIIATNRQLSVLHPIHKLLYPHFRDKMNINALARQALINADGIIELSFLFGQYSIEMSSKVYKNWVFPDQALPKDLIKRGMAVEDSECPYGLRLVIEDYPFALDGLEIWAAINAWVHDYVHCYYDSDEDVQQDSELQAWWKETVLIGHGELKDQPWWFKMQTLAELIEACTIIIWTSSALHAAVNFGQYPYGGYIVNRPTLSRRLLPEEGSPEYEELKKNPEKALLKTMTPKLQTLMDLSVIEILSRHASDEVYLGTRDNPNWTCDVKPLEAFKKFGKKLEEIEKKLIERKQHRDPKKQVGASQHALHSSVSHKGGRTDLQRNSK 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g0390 1015 Gene3D PLAT/LH2 domain 219 323 - -
Acco07g0390 1015 FunFam Lipoxygenase 519 652 - -
Acco07g0390 1015 MobiDBLite consensus disorder prediction 55 87 - -
Acco07g0390 1015 CDD SANT_TRF 6 57 - -
Acco07g0390 1015 SMART sant 4 59 IPR001005 -
Acco07g0390 1015 SMART h15plus2 115 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Acco07g0390 1015 ProSitePatterns Lipoxygenases iron-binding region signature 2. 702 712 IPR020834 GO:0016702|GO:0046872
Acco07g0390 1015 Gene3D - 113 180 IPR036388 -
Acco07g0390 1015 Gene3D - 519 652 - -
Acco07g0390 1015 Gene3D - 324 428 - -
Acco07g0390 1015 SUPERFAMILY Lipoxigenase 325 992 IPR036226 -
Acco07g0390 1015 PRINTS Lipoxygenase signature 657 674 IPR013819 GO:0016702|GO:0046872
Acco07g0390 1015 PRINTS Lipoxygenase signature 675 692 IPR013819 GO:0016702|GO:0046872
Acco07g0390 1015 PRINTS Lipoxygenase signature 695 715 IPR013819 GO:0016702|GO:0046872
Acco07g0390 1015 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Acco07g0390 1015 ProSiteProfiles PLAT domain profile. 193 319 IPR001024 GO:0005515
Acco07g0390 1015 PRINTS Plant lipoxygenase signature 289 307 IPR001246 GO:0016491
Acco07g0390 1015 PRINTS Plant lipoxygenase signature 354 370 IPR001246 GO:0016491
Acco07g0390 1015 PRINTS Plant lipoxygenase signature 387 406 IPR001246 GO:0016491
Acco07g0390 1015 PRINTS Plant lipoxygenase signature 544 563 IPR001246 GO:0016491
Acco07g0390 1015 PRINTS Plant lipoxygenase signature 315 336 IPR001246 GO:0016491
Acco07g0390 1015 PRINTS Plant lipoxygenase signature 457 478 IPR001246 GO:0016491
Acco07g0390 1015 PRINTS Plant lipoxygenase signature 932 946 IPR001246 GO:0016491
Acco07g0390 1015 PRINTS Plant lipoxygenase signature 610 634 IPR001246 GO:0016491
Acco07g0390 1015 PRINTS Plant lipoxygenase signature 505 521 IPR001246 GO:0016491
Acco07g0390 1015 MobiDBLite consensus disorder prediction 65 87 - -
Acco07g0390 1015 ProSitePatterns Lipoxygenases iron-binding region signature 1. 675 689 IPR020833 GO:0016702|GO:0046872
Acco07g0390 1015 FunFam Lipoxygenase 654 1004 - -
Acco07g0390 1015 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Acco07g0390 1015 MobiDBLite consensus disorder prediction 977 1015 - -
Acco07g0390 1015 Pfam PLAT/LH2 domain 228 318 IPR001024 GO:0005515
Acco07g0390 1015 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Acco07g0390 1015 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 117 203 IPR005818 GO:0000786|GO:0003677|GO:0006334
Acco07g0390 1015 Gene3D - 429 518 IPR027433 -
Acco07g0390 1015 MobiDBLite consensus disorder prediction 977 991 - -
Acco07g0390 1015 MobiDBLite consensus disorder prediction 993 1007 - -
Acco07g0390 1015 FunFam Telomere repeat-binding factor 1 2 58 - -
Acco07g0390 1015 Gene3D - 653 1002 - -
Acco07g0390 1015 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 322 1015 IPR013819 GO:0016702|GO:0046872
Acco07g0390 1015 SMART LH2_4 197 320 IPR001024 GO:0005515
Acco07g0390 1015 Pfam Myb-like DNA-binding domain 6 57 IPR001005 -
Acco07g0390 1015 Pfam Lipoxygenase 332 994 IPR013819 GO:0016702|GO:0046872
Acco07g0390 1015 SUPERFAMILY "Winged helix" DNA-binding domain 118 177 IPR036390 -
Acco07g0390 1015 Pfam linker histone H1 and H5 family 119 177 IPR005818 GO:0000786|GO:0003677|GO:0006334
Acco07g0390 1015 Gene3D - 8 82 - -
Acco07g0390 1015 MobiDBLite consensus disorder prediction 382 408 - -
Acco07g0390 1015 PANTHER LIPOXYGENASE 223 992 IPR000907 GO:0016702|GO:0034440|GO:0046872
Acco07g0390 1015 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 225 323 IPR036392 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g0390 Acco-ChrAcco07 4603919 4613509 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco07g0390 230 991 Acyl Lipid Metabolism Gene Families AT1G55020 60.602 0.0 980
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Acco07g0390 Lipoxygenase 2e-290 No_clan