Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g0363 ATGGACCCAAGAGCAAATTGTAATCCTCGCACAGTTGAAGAGGTTTTCAGGGATTTCAAGGGCCGAAGAGCTGCAATGATTAAAGCCCTCACATCGGAGGTTGAAGATTTTTACAACCAATGTGACCCTGAGAAGGAGAATTTGTGCTTGTATGGGCTTCCTAGTGAGCAGTGGGAAGTGAACCTACCTGCTGAAGAAGTTCCTCCAGAGCTTCCTGAACCTGTTCTGGGAATTAATTTTGCCAGGGATGGCATGCAAGAAAAAGACTGGTTATCTTTAGTCGCAGTCCACAGTGATACATGGTTACTTTCCGTGGCCTTTTATTTTGGAGCCAGATTTGGGTTTGATAGAGCTGACAGGAAACGACTTTTCAATATGATCAATGAACTGCCAACAATTTTTGAAGTTGTTACTGGTACAGTGAAGAAAGAAGGGAAGGAGAAGCCTTCAAATCAAGGCAGCAACAAATCTAAGTCTGGTTCTAAGATGAGAGTTTCAGAAGGTCAGGGTAGACAATTGAAGTTGCAGCATCCGAAAGATGAGGATGAAGTTCCAGAGGAAGAAGATGAAGAGGATGATCATGGGGATATCCCTTGTGGGGCATGCGGCGAGAGTAACGCTACTGATGAGTTCTGGATTTGCTGTGACATCTGCGATAAGTGGTTCCATGGCAAATGTGTGAAGATTACTTCTGCAAGGGCAGAGCATATCAAGCAATACAAATGCCCATCATGCAGTAACAAGAGAGCTCGGTGCTGA 759 0.4453 MDPRANCNPRTVEEVFRDFKGRRAAMIKALTSEVEDFYNQCDPEKENLCLYGLPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDTWLLSVAFYFGARFGFDRADRKRLFNMINELPTIFEVVTGTVKKEGKEKPSNQGSNKSKSGSKMRVSEGQGRQLKLQHPKDEDEVPEEEDEEDDHGDIPCGACGESNATDEFWICCDICDKWFHGKCVKITSARAEHIKQYKCPSCSNKRARC 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g0363 252 MobiDBLite consensus disorder prediction 152 166 - -
Acco07g0363 252 SUPERFAMILY FYVE/PHD zinc finger 187 249 IPR011011 -
Acco07g0363 252 ProSitePatterns Zinc finger PHD-type signature. 199 245 IPR019786 -
Acco07g0363 252 FunFam PHD finger alfin-like protein 191 247 - -
Acco07g0363 252 Pfam PHD-finger 199 248 IPR019787 -
Acco07g0363 252 ProSiteProfiles Zinc finger PHD-type profile. 196 248 IPR019787 -
Acco07g0363 252 SMART PHD_3 198 246 IPR001965 -
Acco07g0363 252 CDD PHD_AL_plant 198 248 IPR044104 -
Acco07g0363 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 247 IPR013083 -
Acco07g0363 252 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Acco07g0363 252 PANTHER CPG BINDING PROTEIN 8 251 IPR045104 GO:0006355|GO:0042393
Acco07g0363 252 MobiDBLite consensus disorder prediction 143 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g0363 Acco-ChrAcco07 4144112 4147667 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco07g0363 8 251 Alfin-like Transcription Factor Family AT3G42790 72.951 1.47e-119 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Acco07g0363 Alfin 6.8e-68 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco09g1643 09 32818572 32822683 Acco07g0363 07 4144112 4147667 CCT
Acco07g0363 07 4144112 4147667 Acco09g1643 09 32818572 32822683 ECH
Acco07g0363 07 4144112 4147667 Acco07g0363 07 4144112 4147667 ECH