Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g0349 ATGCGAAACCTAATCGCAGAGAGGAGGCTCAGTTTTCGTCAGAGTTCACAGAAGCTCATCAACATGGCGACCCAAATGAGCAAAAAGCGAAAGTTTGTAGCCGATGGAGTTTTTTTCGCGGAGCTGAATGAGGTTTTGACTAGGGAGCTTGCAGAGGATGGTTACTCTGGTGTTGAAGTTAGGGTCACCCCCATGCGGACTGAGATCATCATTAGGGCGACTCGCACACAGAATGTTCTTGGTGAGAAGGGAAGAAGAATTAGGGAACTGACTTCCATTGTTCAGAAGCGTTTCAAGTTCCCTGAGAACAGTGTTGAGCTATATGCTGAGAAAGTCAACAACAGAGGGCTCTGTGCTATTGCACAAGCAGAGTCTCTGCGTTACAAGCTTCTTGGAGGTCTTGCTGTCAGAAGGGCTTGCTATGGTGTCCTTAGGTTTGTCATGGAGAGTGGCGCCAAAGGTTGTGAGGTTATTGTTAGTGGCAAGCTCAGAGCCCAGCGTGCCAAATCTATGAAATTCAAGGACGGATACATGATATCATCTGGTCAGCCCGTCAAAGAATACATCGACTCTGCTGTGAGACACGTGCTTTTGAGACAGGGTGTTCTTGGTATCAAGGTGAAAATTATGCTTGATTGGGATCCCAAGGGCAAGCAAGGACCAACGAAGCCTATTCCGGATGTGGTCACAATCCATCCACCAAAGGAGGAAGAAGATTACATTGTTAGGCCCTTGCAAGCGCCCGCAGTCCCCACCAACATAGAGATTCCAGCTGTCTAG 780 0.4808 MRNLIAERRLSFRQSSQKLINMATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSIVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPTKPIPDVVTIHPPKEEEDYIVRPLQAPAVPTNIEIPAV 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g0349 259 Gene3D - 114 240 IPR036419 -
Acco07g0349 259 Pfam KH domain 41 114 IPR004044 GO:0003723
Acco07g0349 259 ProSiteProfiles Type-2 KH domain profile. 42 113 IPR004044 GO:0003723
Acco07g0349 259 Pfam Ribosomal protein S3, C-terminal domain 127 209 IPR001351 GO:0003735|GO:0006412
Acco07g0349 259 ProSitePatterns Ribosomal protein S3 signature. 168 204 IPR018280 -
Acco07g0349 259 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 27 219 - -
Acco07g0349 259 Gene3D - 19 112 IPR015946 -
Acco07g0349 259 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 31 120 IPR009019 GO:0003723
Acco07g0349 259 NCBIfam 30S ribosomal protein S3 29 231 IPR005703 GO:0003735|GO:0006412|GO:0015935
Acco07g0349 259 FunFam 40S ribosomal protein S3 114 248 - -
Acco07g0349 259 CDD KH-II_40S_S3 26 116 - -
Acco07g0349 259 SUPERFAMILY Ribosomal protein S3 C-terminal domain 114 212 IPR036419 -
Acco07g0349 259 FunFam 40S ribosomal protein S3 22 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g0349 Acco-ChrAcco07 3952161 3954342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco07g0349 22 259 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 84.898 4.03e-151 419