Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g0309 ATGCAGAATCCAAGGCTGAAGCAGCACCAGCAGCAAGCTTTGATGCAACAAGCTCTTATGCAACAACAGTCACTCTACCATCCTGGCCTCTTAGCTGCTCCTCAGATTGAACCAATTCCGAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTTCTTGCCGCAGTGTGTATGTGGGGAATATTCATCCACAGGTAACTGAGTCCCTGCTTCAGGAACTTTTTGCAAGTAATGGCCCAGTTGAAGGTTGTAAACTTATTAGGAAGGAGAAGTCATCCTATGGATTCGTTCACTATTTTGATCGTAGATCAGCTGCTCTTTCCATATTATCTCTCAACGGAAAGCACCTGTTTGGTCAGCCTATCAAAGTTAACTGGGCATATGCTAGTGGGCAGAGAGAGGATACATCAGGTCATTACAACGTATTTGTTGGTGATCTTAGTCCTGAGGTTACTGATGCTACATTGTTTGCTTGCTTTTCTGTTTACCCCAGTTGCTCAGATGCAAGGGTTATGTGGGATCAGAAAACAGGACGATCAAGAGGGTTTGGATTTGTTTCATTCCGTAATCAACAGGATGCACAAAGCGCAATTAATGACTTGACCGGCAAGTGGCTTGGGAGTAGACAAATACGCTGTAACTGGGCGACAAAAGGTGCTGGTTCTAGTGAGGACAAGCAGGGTTCAGACACTAAAAGCGTGGTTGAACTTACAAATGGCACATCTGAAGATGGTAAGGAGACGAGTAACAGTGATGCCCTGGAGAACAATTCGCAATATACTACTGTCTATGTGGGAAATCTTGCACCAGAGGTAACCCAGCTTGATCTACATCGCCACTTCCATAATCTTGGAGCTGGTGCAATAGAGGAGGTTCGAGTCCAGCGGGATAAAGGGTTTGGTTTTGTGAGGTACAGTACACATGCTGAATCAGGAATGGCTATTCAGATGGGGAATACCCAGTCTTTTCTCTTGGGCAAACAAATTAAGTGCTCCTGGGGGAGCAAGCCCACTCCTCCTGGAACTGCTTCAAATCCTCTTCCCCCACCTGCTGCTGCTGCTGCGCCTCTGGCTGGTTTCTCAGCATCCGATCTTCTGGCCTACGAGCGTCAGCTGGCAATGAGCAAGATGGGTGGCGTCCATGCCCTGATGCACCCCCAAGGGCAGCATCCTCTTAAACAGGCAGCACTTGGAGGAAGCCAGGCAATATATGATGGTGGGTTCCAGAATGTTGCTGCACAACAAATGATGTATTACCAGTGA 1260 0.4738 MQNPRLKQHQQQALMQQALMQQQSLYHPGLLAAPQIEPIPSGNLPPGFDPSSCRSVYVGNIHPQVTESLLQELFASNGPVEGCKLIRKEKSSYGFVHYFDRRSAALSILSLNGKHLFGQPIKVNWAYASGQREDTSGHYNVFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGSSEDKQGSDTKSVVELTNGTSEDGKETSNSDALENNSQYTTVYVGNLAPEVTQLDLHRHFHNLGAGAIEEVRVQRDKGFGFVRYSTHAESGMAIQMGNTQSFLLGKQIKCSWGSKPTPPGTASNPLPPPAAAAAPLAGFSASDLLAYERQLAMSKMGGVHALMHPQGQHPLKQAALGGSQAIYDGGFQNVAAQQMMYYQ 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g0309 419 SUPERFAMILY RNA-binding domain, RBD 51 218 IPR035979 GO:0003676
Acco07g0309 419 Gene3D - 1 137 IPR012677 -
Acco07g0309 419 SUPERFAMILY RNA-binding domain, RBD 255 341 IPR035979 GO:0003676
Acco07g0309 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 54 128 IPR000504 GO:0003723
Acco07g0309 419 CDD RRM1_PUB1 56 126 - -
Acco07g0309 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 217 IPR000504 GO:0003723
Acco07g0309 419 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 52 338 - -
Acco07g0309 419 CDD RRM2_PUB1 138 217 - -
Acco07g0309 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 56 122 IPR000504 GO:0003723
Acco07g0309 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 262 326 IPR000504 GO:0003723
Acco07g0309 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 211 IPR000504 GO:0003723
Acco07g0309 419 FunFam Oligouridylate-binding protein 1C 237 339 - -
Acco07g0309 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 260 335 IPR000504 GO:0003723
Acco07g0309 419 SMART rrm2_1 140 213 IPR003954 GO:0003676
Acco07g0309 419 SMART rrm1_1 55 124 IPR000504 GO:0003723
Acco07g0309 419 SMART rrm1_1 140 213 IPR000504 GO:0003723
Acco07g0309 419 SMART rrm1_1 261 331 IPR000504 GO:0003723
Acco07g0309 419 FunFam oligouridylate-binding protein 1B-like isoform X2 1 136 - -
Acco07g0309 419 Gene3D - 138 218 IPR012677 -
Acco07g0309 419 FunFam oligouridylate-binding protein 1-like isoform X2 137 232 - -
Acco07g0309 419 Gene3D - 237 339 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g0309 Acco-ChrAcco07 3358789 3363343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco07g0309 55 329 Eukaryotic Initiation Factors Gene Family AT3G16380 27.397 7.46e-20 89.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco07g0309 07 3358789 3363343 Acco07g0309 07 3358789 3363343 ECH