Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g0301 ATGTCGGCAGCTCTGTTTGCTTCTCTGGAAATATGGTGGAATGAAATTTCCCAGTCTCTCCTCTTGAGTTCCCTTAACCAAATAGGGCAGGAACCATACCCATCATCGGCCACCATAGATTCACAAATGAAGGCCTGTGAAAGTTATAGCGAAGCTGAAGGCTCCGATCCTGATTCGATTTCGGATGATCTGGAAGAAGATCCCGATTTTGCCATAACCGAAGAAACCTACAGCAAGTTTTCCAACCTCTCAATCGAAAAGAAAAAGGCTAAGACGAGTATTCTTCATGGTGAGGTTTCGCAAATGGAGATTGAACCAGAAGAGCAGAAGACTGAACCCGATCTTGATGAGAATGATGAGAAAAGTTTTGAGAAAGTACAAAAAATCATAGAAGCGAAAGAATGGGCGAAACTAAAAATACCTGAATGCAAGTTCTATCTGAGGATGAATGGGCTGAGATTGACTGGAAATAAGGACACTCTCATTCAGCGAATAAGGGAGCATCTAGAGATTATAAATGGTGGAGGAGAGAGGAAGTACCCGCCTTCTAGCTTTGTTCAGAACTGTAAAGGTGATGCATGCACTGGTGATGTTGTTCTGTTTGAGCAAAATGTTTACGAAATGTTCAGCGTAGTATCTAGGAGTGCCAGTGGTCCACCATGTGGCAAAAGGATTGTTGCAGGCCGTATAGTGAAGGAAAGCTACGGTGCTACGAAGCAACAACATACATTTACGATTGAAGTACTGTGGAGCAAGGGAGAGAAGCCACTTCCTCCACTATATCCCCTACTGATTAAGGGTCGAAACCTTTATAGGTTGAAGACTTTGAGACAGAGATGGGATGATGAAGGGAAAAGGCAGAAAATTTTGATGGAAAAACACTCCAGGGGAAATGTTGCAAGGGCAAACAGAGAAGCAAGGATACAAGAAAAGGAGAAGAGGAAAACAATTAGGGAAAACAGGGTTTCCAAAAAGGAGACATCAAGTAACCAATCTCAACCACATCCACCCATGACAAAGTCACAGTATCAACAACAAGAATCTAGATGCATCAACCCAGTAAAGCCAGAATTTTTTGTTGACCAAGGCGAAGAAGTTGCAACAAAGCCTCGCCAATTTAAAGAGAAACTCATTACTAATGAGAATCAACCTTGCAGTAATATGACAAACATGGCTGCAGGATGGTCTTTTCGACTTCAAGAATTTAGATGCATTAATCCAGCAAAGCCAGAATTTTTCTTTGGACAAGGTGGAAGAGTTGCAACAAGGCCTCACCATTTCAATGAGAAACTCATTACTACTGAGAATTACCCTTGTAGTGATATGACAAACAGGGTTGCAGAATGGCCTTATCAACATAAAGAATCTATATGCATCAACCCAGCAAAGCCAGAATTTTTCTTTGGCCAAGGCGAAAGAGTTGCAACAAGGCCTCACCAGTTAGAGAAACTCATTACTACCGAGAATTACCCTTGCAATTCTATGACAAACAGGTTTGCAGAATGGCCTCACCATAGAAAACCTTTGACGAACGCTAATTACTTGTTTCCATTGACCCTAAACAGAGAATCCTTTCAGCAAAAGCAACCTTGCAAATATTATGACCAAGGCAGGTGTCGTTTTGGAGACAACTGCAAATTTTTACATGGTGTGAGATCATAG 1662 0.417 MSAALFASLEIWWNEISQSLLLSSLNQIGQEPYPSSATIDSQMKACESYSEAEGSDPDSISDDLEEDPDFAITEETYSKFSNLSIEKKKAKTSILHGEVSQMEIEPEEQKTEPDLDENDEKSFEKVQKIIEAKEWAKLKIPECKFYLRMNGLRLTGNKDTLIQRIREHLEIINGGGERKYPPSSFVQNCKGDACTGDVVLFEQNVYEMFSVVSRSASGPPCGKRIVAGRIVKESYGATKQQHTFTIEVLWSKGEKPLPPLYPLLIKGRNLYRLKTLRQRWDDEGKRQKILMEKHSRGNVARANREARIQEKEKRKTIRENRVSKKETSSNQSQPHPPMTKSQYQQQESRCINPVKPEFFVDQGEEVATKPRQFKEKLITNENQPCSNMTNMAAGWSFRLQEFRCINPAKPEFFFGQGGRVATRPHHFNEKLITTENYPCSDMTNRVAEWPYQHKESICINPAKPEFFFGQGERVATRPHQLEKLITTENYPCNSMTNRFAEWPHHRKPLTNANYLFPLTLNRESFQQKQPCKYYDQGRCRFGDNCKFLHGVRS 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g0301 553 ProSiteProfiles Zinc finger C3H1-type profile. 525 552 IPR000571 GO:0046872
Acco07g0301 553 PANTHER SAP DOMAIN-CONTAINING PROTEIN 45 551 - -
Acco07g0301 553 SUPERFAMILY SAP domain 124 170 IPR036361 -
Acco07g0301 553 Coils Coil 299 319 - -
Acco07g0301 553 MobiDBLite consensus disorder prediction 97 120 - -
Acco07g0301 553 ProSiteProfiles SAP motif profile. 135 169 IPR003034 -
Acco07g0301 553 SUPERFAMILY CCCH zinc finger 527 550 IPR036855 GO:0046872
Acco07g0301 553 SMART c3hfinal6 526 551 IPR000571 GO:0046872
Acco07g0301 553 MobiDBLite consensus disorder prediction 287 347 - -
Acco07g0301 553 MobiDBLite consensus disorder prediction 287 325 - -
Acco07g0301 553 Pfam CCCH-type zinc finger 530 550 IPR041367 -
Acco07g0301 553 Gene3D SAP domain 116 181 IPR036361 -
Acco07g0301 553 Gene3D - 509 553 - -
Acco07g0301 553 MobiDBLite consensus disorder prediction 32 68 - -
Acco07g0301 553 MobiDBLite consensus disorder prediction 326 347 - -
Acco07g0301 553 Pfam SAP domain 137 169 IPR003034 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g0301 Acco-ChrAcco07 3315491 3319389 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Acco07g0301 SAP 6e-07 CL0306