LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco07g0272	ATGTGTGGAGGTGCTATTATCTCCGACTTCATTCCGACACCGGAGGCCAGGTCTCGGCGGCTGACCGCTGATATCCTCTGGCCGGATTTGAAGAAACCCAGTTGTGGGAAGCGAGTCTCGAAGCCCGCTAGATCTGCATTCGGGGATTCGGACGATGACTTCGAAGCTGATTTTAGGGAGTTCAAGGACGAGTCTGATGTCGATGAGGTGGATGTGGATGATGATTTGCTGTGCGATTTCAAGACCTTTGGTTTCTCTGCTGCCAAACCTCCCAAGCCTTCCAGATCCCTGTCTCGCGGATCTGGTGCTGTAGAATCTGTGAAATTCAATGGAAAAGCTAACAAGTCTGAGAAAAGAAAGAGGAAGAATCTCTACAGGGGGATCCGTCAACGCCCATGGGGAAAATGGGCAGCCGAGATCCGTGACCCAAGGAAAGGAGTCCGTGTCTGGCTGGGAACTTTCAACACTGCTGAAGAAGCAGCTAGAGCCTATGATGCTGAAGCAAGGAGGATTCGTGGTAAGAAAGCCAAGGTGAACTTTCCAGATGAGGCATCAGGCTCTCCCCCAAAATGTTACAACGTAAAACACTCTGTCCAGCCCATTATGAGCCAGACATTGAATTTTGGAAAAAATCCAAAGGACTACTCCTGTCCTATGGGTCTGATGGAGCAGAAACCACTGGTTAATCAGTATGCTAACATGGGGGGCTTACCCAGCAGTGCAGATGGGCTCACATCTGTCATTCCATCGGATGATGTTAATGTTCCTGTTTGTTTCAGTTCAGATCAAATGAGTAATTCGTTTGATTACTCTAGTATTAGCTGGGGCGAGCAGGGCCCAAAGACTCCTGACATCTCGTCAATGCTTTCTGCTTCTATAGAAGATGAATTTAAAGCTATATTGAATCCCAGTTGCAGTTCTTTCAGACACCTTACCTTCAAGGGAGCTGGGACGATGCTTCATTAG	966	0.4814	MCGGAIISDFIPTPEARSRRLTADILWPDLKKPSCGKRVSKPARSAFGDSDDDFEADFREFKDESDVDEVDVDDDLLCDFKTFGFSAAKPPKPSRSLSRGSGAVESVKFNGKANKSEKRKRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPDEASGSPPKCYNVKHSVQPIMSQTLNFGKNPKDYSCPMGLMEQKPLVNQYANMGGLPSSADGLTSVIPSDDVNVPVCFSSDQMSNSFDYSSISWGEQGPKTPDISSMLSASIEDEFKAILNPSCSSFRHLTFKGAGTMLH	321

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco07g0272	321	SMART	rav1_2	124	187	IPR001471	GO:0003700\|GO:0006355
	Acco07g0272	321	CDD	AP2	125	182	IPR001471	GO:0003700\|GO:0006355
	Acco07g0272	321	PRINTS	Ethylene responsive element binding protein signature	147	163	IPR001471	GO:0003700\|GO:0006355
	Acco07g0272	321	PRINTS	Ethylene responsive element binding protein signature	125	136	IPR001471	GO:0003700\|GO:0006355
	Acco07g0272	321	Gene3D	AP2/ERF domain	124	182	IPR036955	GO:0003700\|GO:0006355
	Acco07g0272	321	MobiDBLite	consensus disorder prediction	88	121	-	-
	Acco07g0272	321	PANTHER	DNA-BINDING DOMAIN	99	209	IPR044808	GO:0003700\|GO:0009873
	Acco07g0272	321	FunFam	Ethylene-responsive transcription factor 2	123	182	-	-
	Acco07g0272	321	Pfam	AP2 domain	125	173	IPR001471	GO:0003700\|GO:0006355
	Acco07g0272	321	SUPERFAMILY	DNA-binding domain	124	183	IPR016177	GO:0003677
	Acco07g0272	321	ProSiteProfiles	AP2/ERF domain profile.	124	181	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco07g0272	Acco-ChrAcco07	2926444	2928728	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco07g0272	1	297	AP2-EREBP Transcription Factor Family	AT3G14230	51.899	2.70e-61	198

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Acco07g0272		AP2	1.2e-12	CL0081