Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g0271 ATGGCTTCATCATCTTCTTCACCTAAAACAACCAGAAAGCCTGGGAAAGGTAGGCGCAAGATTGAGATTAAGAAAGTCGAACAAACCAGCAAGCGTCTTGTCACATTCTCAAAACGCAAACTTGGCCTCTTCCGCAAAGCCGCCGAACTTTCTCTTCTCTGTGATTCACAAATCGCCGTCATTGTCTTCTCCCAATTCGGCAAGGTCTTCTCCTCTGGCTACCCTAACCCTGACGCCATCATCAGCCGCTACCTCTCTAGCGCCACCTCGTCGTCCTCCTCCTCGTTCTCGGACCCTACGCCGGTTCATGATCCGGAAAGAGAATCGGCGCCGCTGAGGCGGGAATTTGAAGATGCCTTGAAAGTGTTGGAAGAGGAGAAGAAATTTGTGAATGCTGAGACTGGCAGATCGGGTTGCGGGCATGAGTTATGGTGGAACCGTTCGGTTGAGGAGATGGGTTTGGAGGAAGTTGTGCAGTTCAAGGAGTGTGTTGAACAGTTGAGGCAGAATGTCGCCGCTGCGGCAGAGGAGAAGAAGAAGATCACTTGGCTGATCGATTCGCAGTCACCGCCGGTGACCACGACGGAGGAGAAGAAGAGCACTTGGCTGATCGATTCACAGTCACCGCCCGTGGTGACCATGGTGGAGGAGAATAAGAGCACGTGGTTGATCGATTCACAGTTGCCACTGCCAGTGACCACAACGGAGGAGGAGAAGAGCACTTGGCTGATCGATTCACAGTTGCCGCTGCCAGTGACCACGGCGGAGGAGAAGGATTACACTTGGCTGATCGATACACAGTTGCCACTGCCAGTGACCACGACGGAGGAGGAGAAGAGTACTTGGCTGATCGATTCACAGTTGCCGCTGCCAGTGACCACGGCGGAGGAGAAGAATTGCACTTGGCTGATCGATACACAGTCGCCGCCGTGGTCAACAGCAGAGTCTATGTATCTCCCTATGCTGGACGACATCCTGGAGATTGATCAAAAATGGGAATCTTGGGATACAAGTAACAGTTGTGATTCCATTGTTCCGTACAGAAGTGATCTTGGGCTATACTAG 1065 0.5221 MASSSSSPKTTRKPGKGRRKIEIKKVEQTSKRLVTFSKRKLGLFRKAAELSLLCDSQIAVIVFSQFGKVFSSGYPNPDAIISRYLSSATSSSSSSFSDPTPVHDPERESAPLRREFEDALKVLEEEKKFVNAETGRSGCGHELWWNRSVEEMGLEEVVQFKECVEQLRQNVAAAAEEKKKITWLIDSQSPPVTTTEEKKSTWLIDSQSPPVVTMVEENKSTWLIDSQLPLPVTTTEEEKSTWLIDSQLPLPVTTAEEKDYTWLIDTQLPLPVTTTEEEKSTWLIDSQLPLPVTTAEEKNCTWLIDTQSPPWSTAESMYLPMLDDILEIDQKWESWDTSNSCDSIVPYRSDLGLY 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g0271 354 Coils Coil 113 133 - -
Acco07g0271 354 SUPERFAMILY SRF-like 17 88 IPR036879 GO:0003677|GO:0046983
Acco07g0271 354 PANTHER MADS BOX PROTEIN 18 172 - -
Acco07g0271 354 MobiDBLite consensus disorder prediction 91 111 - -
Acco07g0271 354 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Acco07g0271 354 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 71 IPR002100 GO:0003677|GO:0046983
Acco07g0271 354 Gene3D - 29 98 IPR036879 GO:0003677|GO:0046983
Acco07g0271 354 MobiDBLite consensus disorder prediction 1 23 - -
Acco07g0271 354 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Acco07g0271 354 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Acco07g0271 354 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Acco07g0271 354 Coils Coil 157 177 - -
Acco07g0271 354 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g0271 Acco-ChrAcco07 2908573 2909637 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco07g0271 17 188 Type I MADS-box Gene Family AT2G24840 33.889 7.74e-24 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Acco07g0271 SRF-TF 9.2e-19 No_clan