Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g0183 ATGGAGGAGATAGAAGATGATGTGGAAGAACAACTATATGATGAAGGAGTGGATGGAGGTGGTGATGAAAATGAGGAGAATGTTGAGGAACATGAATATGAAGATTCATTAGCAGAACCTTGTGGGAAAGACCAATATCCGGAAGCAGATGGAAGTGACATTGTTACTGACTCTGTAGAAAATGAGCAAAAGCCATTTTCCATTGATGAAAATGAGAAGGAGATACATGAGGAACTTCTTGCACTTCCTCCTCATGGTTCTGAAGTCTTTATTGGCGGACTTCCTCGGGATACATGCGAAGATGACTTAAGAGAAATGTGTGAGCCAATTGGTGATATTCTCGAGGTGAGACTTATGAAAGATAGGGATACAGGAGATGTTAAGGGCTATGCTTTTGTGGCATTTAAAACGAAAGAGATTGCGCAGAAAGCCATTGAAGAGTTACATAGCAAGGAATTTAAGGGTAAAACTTTAAGGTGTTCTGTGTCTGAAACAAAACACAGATTGTTTATGGGTAATGTTCCAAAAAGCTGGACGGAGGATGAGTTTAGGAAAGTCATCATGGGTGTTGGTCCTGGAGTTGAAAATATTGAGCTGATAAAGGACCCCCAAAATGCAAGCAGGAATCGTGGGTTTGCTTTTGTTTTGTATTATAATAATGCCTGTGCTGATTATTCTCGGAAAAAGATGTCGAATGCAAACTTTAAGCTGGATGGTAATACCCCAACTGTCACTTGGGCAGATCCAAAGAACTCACCTGATCATTCGGCCTCATCACAAGTTAAAGCTCTTTATGTAAAAAACATACCTGAGAATACTACTACTGAACAACTGAAGGAACTGTTCTGCCAACATGGAGAAGTAACCAAAGTGGTCATGCCTCCTGGGAAAGCTGGAGGCAAACGTGACTTTGGTTTCATTCATTATGCAGAGAGGTCAAGTGCATTGAAGGCAGTGAAAGATACAGAAAAATATGAAATAGATGGCCAAGTGTTGGAAGTTGTTCTAGCAAAGCCTCAAGCTGATAAAAAAACTGATGGGGGCTATGCCTACAATCCTGGGCTTCAACCACATCCTCGGTATGGTGGTTTCTCAGGAAATCTATACGGTTCTATGAGGCCTGCATATGGCGCTACTGGTGGTTATCAACAACCAGTGATATATGGTAGGGGTCCAATGCCAGCAGGAATGCAGATGGTTCCAATGGTATTACCTGACGGTCGTATTGGCTATGTCCTTCAACAGCCAGGCGCGCAGATGTCAGCTCCTCCCCGACCCCACAGGAACAATGGCCGAAGCAGTCAGCCAGGGCGAGGGGGAGGCAGCGGCAATGATGAGGGCAATCGCAGTAGAAGGTATCGACCTTATTAA 1371 0.4354 MEEIEDDVEEQLYDEGVDGGGDENEENVEEHEYEDSLAEPCGKDQYPEADGSDIVTDSVENEQKPFSIDENEKEIHEELLALPPHGSEVFIGGLPRDTCEDDLREMCEPIGDILEVRLMKDRDTGDVKGYAFVAFKTKEIAQKAIEELHSKEFKGKTLRCSVSETKHRLFMGNVPKSWTEDEFRKVIMGVGPGVENIELIKDPQNASRNRGFAFVLYYNNACADYSRKKMSNANFKLDGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENTTTEQLKELFCQHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQADKKTDGGYAYNPGLQPHPRYGGFSGNLYGSMRPAYGATGGYQQPVIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGAQMSAPPRPHRNNGRSSQPGRGGGSGNDEGNRSRRYRPY 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g0183 456 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 22 439 - -
Acco07g0183 456 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 159 IPR000504 GO:0003723
Acco07g0183 456 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 264 332 IPR000504 GO:0003723
Acco07g0183 456 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 169 235 IPR000504 GO:0003723
Acco07g0183 456 MobiDBLite consensus disorder prediction 426 441 - -
Acco07g0183 456 Gene3D - 168 248 IPR012677 -
Acco07g0183 456 Gene3D - 250 383 IPR012677 -
Acco07g0183 456 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 339 IPR000504 GO:0003723
Acco07g0183 456 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 167 249 IPR000504 GO:0003723
Acco07g0183 456 CDD RRM_SF 89 161 - -
Acco07g0183 456 SUPERFAMILY RNA-binding domain, RBD 84 251 IPR035979 GO:0003676
Acco07g0183 456 MobiDBLite consensus disorder prediction 416 456 - -
Acco07g0183 456 SUPERFAMILY RNA-binding domain, RBD 256 363 IPR035979 GO:0003676
Acco07g0183 456 MobiDBLite consensus disorder prediction 1 68 - -
Acco07g0183 456 MobiDBLite consensus disorder prediction 1 33 - -
Acco07g0183 456 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 1 167 - -
Acco07g0183 456 Gene3D - 3 167 IPR012677 -
Acco07g0183 456 SMART rrm1_1 263 335 IPR000504 GO:0003723
Acco07g0183 456 SMART rrm1_1 88 161 IPR000504 GO:0003723
Acco07g0183 456 SMART rrm1_1 168 245 IPR000504 GO:0003723
Acco07g0183 456 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 165 IPR000504 GO:0003723
Acco07g0183 456 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 168 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g0183 Acco-ChrAcco07 1993486 1998384 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco07g0183 89 426 Eukaryotic Initiation Factors Gene Family AT2G23350 24.021 7.99e-17 81.3