Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g0116 ATGGCTGACTCTGGTGACCCACCAAAATCTACTGAAAATCAACAATCGGAGCAAGTACAAGAGGAGCCTGAAAAGCAACTGTTTCATTTCGAGTCTTCAAAAGAGATTCAAGTTCACCATGAGAACAAAGCAACAGCCATTCTTGAGACGGAAACTGAGTTTTCAAAGGATGATCGAGCTGTTCGTGAAAGAGCCCTTAAGCAAGCAGAGGAGAGTTTGAAGGGTAAAGGCACTATTTCTAGAGAAGAAAAATTATACAAGGGCATCAATAGTTACAAAGATTACAAGGCTAGCTTTCGTCGGGAGCAAACAATTGCTAGTGAAAAAGCTGGTGGGGCACACGGTCCTCTTAGGGCATCAGCTCACATAAGAGTTTCAGCAAGATTTGACTATCAGCCAGACATATGCAAGGATTACAAGGAGACTGGCTACTGTGGTTATGGTGATTCGTACAAGTTCATGCATGATCGAGGAGATTACAAGTCAGGGTGGCAATTGGAGAAGGAATGGGAGGAAGCTGAGAAAGCTAGGAGAATGAGATTGGCCGCAGGAGAGGATTCAGACGAGGAGGGTGCCAATTTGAGTGATGAAGATGATGATGATTCATTACCATTTGCATGTTTCATTTGTAGGAAGCCCTTTGTGGATCCTGTTGTGACAAACTGCAAGCATTACTTCTGCGAGCATTGTGCATTGAAGCATCATGCAAAGAATAAGAAATGTTTTGTGTGCAACAAGCCTACTCTTGGCATTTTTAATGCAGCTCATGAGATACGCAAGAAGATGGCTGCAGAGGGTAAATAA 804 0.4316 MADSGDPPKSTENQQSEQVQEEPEKQLFHFESSKEIQVHHENKATAILETETEFSKDDRAVRERALKQAEESLKGKGTISREEKLYKGINSYKDYKASFRREQTIASEKAGGAHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSYKFMHDRGDYKSGWQLEKEWEEAEKARRMRLAAGEDSDEEGANLSDEDDDDSLPFACFICRKPFVDPVVTNCKHYFCEHCALKHHAKNKKCFVCNKPTLGIFNAAHEIRKKMAAEGK 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g0116 267 SMART c3hfinal6 130 157 IPR000571 GO:0046872
Acco07g0116 267 SUPERFAMILY RING/U-box 206 249 - -
Acco07g0116 267 ProSiteProfiles Zinc finger RING-type profile. 207 245 IPR001841 -
Acco07g0116 267 SMART ring_2 207 244 IPR001841 -
Acco07g0116 267 FunFam RING finger protein 113A 205 264 - -
Acco07g0116 267 SUPERFAMILY CCCH zinc finger 129 161 IPR036855 GO:0046872
Acco07g0116 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 205 264 IPR013083 -
Acco07g0116 267 Pfam Zinc finger, C3HC4 type (RING finger) 206 248 - -
Acco07g0116 267 PANTHER ZINC FINGER PROTEIN 183 12 265 IPR039971 -
Acco07g0116 267 ProSiteProfiles Zinc finger C3H1-type profile. 130 158 IPR000571 GO:0046872
Acco07g0116 267 CDD RING-HC_RNF113A_B 203 253 - -
Acco07g0116 267 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 131 156 IPR000571 GO:0046872
Acco07g0116 267 MobiDBLite consensus disorder prediction 1 25 - -
Acco07g0116 267 ProSitePatterns Zinc finger RING-type signature. 222 231 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g0116 Acco-ChrAcco07 1234296 1236537 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco07g0116 10 265 C2H2 Transcription Factor Family AT1G01350 69.141 7.51e-134 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Acco07g0116 zf-C3HC4_3 1.2e-08 CL0229