LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco07g0098	ATGATGGCAACCAAATTATATGAGCAGAGAACCATCACAAGCAAGCTTGTGAGAAATTTGTGCTTTTCCGGTGTCACACCAAGAGTTGTTCGGATTTCAGTCTCTGACAACTATGCTACTGATTCTTCTAGTGACGAAGAAGACGAGAGAGGAGGAGGGTTTTCTCGCCCGGTGAAGAAGTTCGTCCATGAGATCAGAATCGAAGACTTGTCGAGTTTCAGAGCTAATAGCAGGGAAGTTAACGGTGATTCCAGGCCCATTTTGGAGAAGAAGAAGAGGGAAAAGCCAACTGCAAGAATGTCCAGGAGGAAACAGAGCCTCTCCGACGGGAAGAAGTTTCGCGGCGTCCGGCAGCGACTGTGGGGCCGGTGGGCGGCGGAGATCCGAGACCCGATTCTGGGAGCTAGGAAGTGGCTTGGCACGTTTGACACGGCAGAGGAAGCGGCTCTTGTGTACGACAAAGAAGCCATTCGTCTGAGAGGAGCCGATGCTCAAACAAATCTAATCAAACCGCCAGAGAAACATGAATCTATAATGCTACCATCAAGCAATCACGAATCCCGAGGATCAGTGGAAATTCCTCTGAAGATGAAGAGCGAGTGGTTGGAAAACGAGTGTGTCTACGATTCAGGCAGAGAGTCTCGCGATTTATTATTGTCTTCGTCTTCTTCGCCGACTTCTGTTCTTAGATACAGTGTGGGAGGGTCTTGTGAACCTTCAGTGTGGGCAGGCATAGAAGAATCCATAGAAGGAGAAAAATTCTTGTTCCCAGATTCTGCATCATCAGAATTTGTAACCTGTTGTTATTCAGATTACGAAACTCCTCTTAGCCCTCCGTTGTTTCTTGAATCCGATGTTCCTCAACTGATTTCTGCCGAGATTTTGAGGGACATTCCATTTCAACTTGATGATGATTTTGAATCTTCCAAGTGGGTCGTTGATCATTACTTTCAGGCTGATTAA	963	0.4673	MMATKLYEQRTITSKLVRNLCFSGVTPRVVRISVSDNYATDSSSDEEDERGGGFSRPVKKFVHEIRIEDLSSFRANSREVNGDSRPILEKKKREKPTARMSRRKQSLSDGKKFRGVRQRLWGRWAAEIRDPILGARKWLGTFDTAEEAALVYDKEAIRLRGADAQTNLIKPPEKHESIMLPSSNHESRGSVEIPLKMKSEWLENECVYDSGRESRDLLLSSSSSPTSVLRYSVGGSCEPSVWAGIEESIEGEKFLFPDSASSEFVTCCYSDYETPLSPPLFLESDVPQLISAEILRDIPFQLDDDFESSKWVVDHYFQAD	320

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco07g0098	320	CDD	AP2	111	167	IPR001471	GO:0003700\|GO:0006355
	Acco07g0098	320	Pfam	AP2 domain	112	161	IPR001471	GO:0003700\|GO:0006355
	Acco07g0098	320	PRINTS	Ethylene responsive element binding protein signature	113	124	IPR001471	GO:0003700\|GO:0006355
	Acco07g0098	320	PRINTS	Ethylene responsive element binding protein signature	135	151	IPR001471	GO:0003700\|GO:0006355
	Acco07g0098	320	SMART	rav1_2	112	175	IPR001471	GO:0003700\|GO:0006355
	Acco07g0098	320	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	26	233	-	-
	Acco07g0098	320	ProSiteProfiles	AP2/ERF domain profile.	112	169	IPR001471	GO:0003700\|GO:0006355
	Acco07g0098	320	MobiDBLite	consensus disorder prediction	81	110	-	-
	Acco07g0098	320	FunFam	Ethylene-responsive transcription factor 2	111	170	-	-
	Acco07g0098	320	MobiDBLite	consensus disorder prediction	83	110	-	-
	Acco07g0098	320	Gene3D	AP2/ERF domain	111	169	IPR036955	GO:0003700\|GO:0006355
	Acco07g0098	320	SUPERFAMILY	DNA-binding domain	112	168	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco07g0098	Acco-ChrAcco07	1053083	1054045	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco07g0098	2	318	AP2-EREBP Transcription Factor Family	AT2G46310	35.152	1.49e-35	128

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Acco07g0098		AP2	2.3e-10	CL0081