Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g0055 ATGCAGTCACTGCAACAGCAATTACTTCGAAAACCTGAAGGGAATGAAACTTTTTTAGCATATCAAGCAGCCCTTCACGGGGCATTTGGTCCCAGTGCCATGCAGTTGCCTCAACAACCTCGGAAATTCAATGAATTAACCCAACATGGCCCAAACCAAGAGGCTCAACTCAAGGCTCAAAACATTGAGCAGCAAATGCGTAATCCTGTTCATCAAGCATACCTTCAATATGCACTCCAGGCTGCCCAACAAAAGTCTGCTATGGCAATCCAGTCTCAGCAGCAAAGTAAAATGGGAATGTTAGGGTCTTCATCTGTGAACGATCAAGAAATGCATATGGGAAATTTGAAAATGCAGGACCTTATGTCTATGCAGGCAGTAAATGAGGCTCAAGGATCTACCTCCAGGAATGTACCTGAACAATTTTCTCGTGGGGAAAAGAAGATAGAACAGGGAAAAGGTGAGGGAAAGCCTTCAACCCAGGGACCAGCCACGACGCAATTAATGCCTGGTCATATGATAAGACCTGTACAAGCACCCAATCCTCGGCAAGGCATCCAAAATGTCATGAGCAATAAGATTGCTGTGTCTGCTCAATTGCAGGCTGTGCAGGCATGGGCACGTGAGCATAATATTGATCCATCAAATCCCGCAAATGCTAACTTAATTGCTCAACTATTTCCTATGATGCAGTCAAGAATGGTTTCCCAACAAAAAGCAAATGAGAGTGGCATTGGTGCTCAGTCATCTTTAGTACCTGTTTCAAAGCAGCAGGTTACATCTCCAGCAGGTGCAAGCGATAGCTCAGCACATGCTAACTCATCAAGTGATGTGTCTGGGCTGTCTGATCCTGCAAAAGCCAGGCAGATTCCTGTCAACCATTTTGGTCCACCAATAAATGCTGTTAAAACTAGTCAGTCCAGTGATACGGCTGTGCAGCACTTTAATAATCATGGCAGAGAGTCTCAAGTATCCGTGAGGCAACCTGTTTTAGTTGGAAATGCAATGCCCTCTGCATCTTCTACCAACATGAATTTGGGTTCAGATCATCATTTGAATGCAAAAGGTGCTTTATCTGGTCCAGAACCTCCGCAAATGCAACATTTAAGGAAGTTAAATCAGTTATCTTCTCAGGCATCAGGCACTACAAATGAAGGGAGCTCAGGAAATTATGTGAAATCCCAAGGGGCACCATCTCAGACGCTTCAACAACGACATGGATTTACCAAACAACAGCTGCATGTTCTTAAAGCACAGATACTGGCATTTAGGCGGCTCAAGAAAGGAGAGGGTACCCTTCCCCAAGAACTTCTTCGGTCTATTAGTCCACCACCTCTTGAGTTGCAACTGCAGCAGCCAATCCATCCTTTAGGAATGCAAAATCAAGATAAGTCTGCTGGAGACATCATGCCAGAACACTCAAGGCACATAGAATCTGATGCAAAGGACTTGCAACATGTCCCTGCAGTTAATGGACAGGGTTCTTCAAAGCAGGAAACTTTTTCCAGAGATGAGAAATCTTCATTGTTGGCAGTTCATATGCAGCCTAAGCCTATTGCAACAAAGGATCATGCTCCTTCTCCAATGCTATCTTCTCAAAAGGAAGAGCAACAGCCATTTGGTTGCCCTGTTAAGTTAGATCAGGAAAGTGAACGTGAAACTAACAGAAATACTGTTCGGAATGAGTTGCTGTTAGACAGGGGGAAGGCTATTGCACCACAGCCTTCTGCATCTGAGTCAATGCAAAATAAGAGCCCAACACAAACAAGCATGGTTGGGCAGCCAAAAGATGTAGGATCTACAAGAAAATATTATGGACCCCTGTTTGATTTTCCCTTCTTTACCAGGAAACATGACTCCTTTGGGTCGTCAATGATGGTAAGCAACAACAACAATTTGTTACTGGCATATGATGTCAAAGATCTTCTTGCTGAGGAAGGCACGAAAGTACTTGACAAGAAAAGGAGAGAGAATTTAAAGAAGATTGAAGGTCTGCTAGCAAATAACTCAGAGAGGAAACTAATTAGGCCTGATCTTGTGTTGAGGTTACAAATTGAAGAGAAAAAACTTCATCTTAGAGGTCTTCAAGCACGGTTAAGGGATGAGATTGATCAACAGCAACAAGAGATAATGGCAATGCCAGACAGGCAATATCGTAAGTTTGTTAGATTGTGTGAGCGTCAGCGTATAGAATTGGCTAGGCAAGTGCAGGCATCACAGAGAGCTACAAGGGAGAAGCAACTCAAATCTATATTTCAGTGGCGTAAGAAGCTTCTTGAGGCACACTGGGCCATTCGTGATGCTCGAACTGCTCGGAATAGGGGGGTGGCCAAATATCATGAGAAAATGTTGAGGGAGTTTTCAAAACGTAAAGATGATGATAGGAACAAAAGGATGGAAGCCTTGAAAAATAATGACGTTGACAGATATAGGGAGATGTTGCTGGAGCAGCAGACTAGCATGCCAGGTGATGCTGCTGAGAGATACTCTGTTGTTTCAACTTTCTTAACACAGACTGAAGAGTATCTTCATAAACTGGGAAGTAAGATAACAGCTGCCAAGAATCAACAGGAAGTAGAGGAGGCAGCAAAAGCTGCTGCAGCTGCTGCACGGTTGCAGGCATGCTTTACCAATCCCTTCTTCTGTTCCGCTCTTTTAGGCCTTTCTGAAGAAGAAGTCAGAGCAGCGGCAGCTTGTGCTGGAGAAGAAGTGATGATTAGAAATCGTTTTATGGAAATGAATGCTCCTAAAGATGGTTCATCTGTCAGCAAGTATTACAACCTTGCTCATGCTGTGAATGAGAAGGTCGTAAGGCAACCATCAATGTTGCGGGCTGGAACATTGAGAGATTATCAGCTTGTTGGCTTGCAATGGATGCTTTCTTTGTATAACAACAAGTTAAATGGAATTTTGGCGGATGAGATGGGTCTTGGCAAAACTGTGCAGGTTATGGCATTGATTGCCTATTTGATGGAATTCAAAGGAAATAATGGTCCACATCTCATAATAGTACCGAATGCTGTTTTGGTTAACTGGAAGAGTGAGTTTTATAACTGGTTACCATCTGTGTCATGCATTTTTTATGTTGGAGGGAAGGATCAACGATCCAAATTATTTTCTCAAGAGGTTTGTGCATTGAAATTTAATGTCCTTGTGACAACTTATGAGTTCATCATGTATGACCGGACAAAGCTTTCAAAAATTGATTGGAAGTATATCATAATTGATGAAGCACAGAGGATGAAAGATAGGGAGTCGGTTCTAGCACGTGATCTTGATCGATATCGTTGTCAGAGACGCCTACTTTTGACTGGAACCCCCCTACAGAATGATCTGAAGGAACTTTGGTCACTTTTAAACCTACTCCTGCCTGAAGTTTTTGACAATCGGAAAGCATTTCATGATTGGTTCTCAAAACCTTTTCAAAAGGAAGGCCTTAGTCAAAATGCGGAGGATGATTGGCTCGAGACAGAAAAGAAAGTTATAATTATCCACCGACTTCATCAGATTCTTGAGCCATTCATGCTTAGGCGTCGTGTTGAAGATGTAGAAGGCATGCTGCCACCAAAGGTCTCTACAGTTTTGCGGTGTAGAATGTCAGCTATCCAGAGTGCTATTTATGACTGGGTCAAATCCACTGGTACCCTTCGTCTTGATCCTGAGGATGAGAAACGTAAGGTTCAAAAGAATCCAGTCTACCAGGCAAAGCAATATAAAACGCTAAATAACAGATGCATGGAGCTGCGTAAAACTTGCAATCACCCATTGCTTAACTACCCATTCTTCAATGACTTATCCAAAGAGTTTCTTGTAAAATCATGTGGGAAACTCTGGATCTTGGATCGAATCCTTATAAAACTTCAAAGGACTGGACACCGAGTTCTGCTCTTTAGCACTATGACTAAACTCTTAGACATTTTGGAAGAATACCTACAATGGCGAAGGCTTGTGTACAGAAGAATTGATGGGACAACAAGTTTAGAAGATCGTGAATCAGCTATAGTGGATTTCAATAGTGCTGATTCGGACTGTTTCATCTTCTTGCTTAGTATTCGAGCTGCTGGTCGAGGCCTTAACCTTCAGTCTGCTGACACAGTAGTGATATATGATCCTGACCCAAATCCTAAAAATGAGGAGCAGGCAGTTGCTAGAGCTCATCGCATTGGTCAGAAAAGAGAAGTTAAAGTTATCTACTTGGAAGCTGTTGTAGACAAAATCTCCAGCTATCAAAAAGAGGATGAACTGAGAAGTGGAGGCACTGTTGATATGGAGGAAGAACTTGTAGGTAAGGATCGTTATATTGGATCCATTGAAAGCCTAATAAGGAACAATATTCAACAGTATAAGATTGATATGGCTGATGAGGTCATTAATGCTGGACGTTTTGACCAAAGAACAACACATGAAGAGAGACGCTTGACTTTGGAGACATTATTACATGATGAAGAAAGGTATCAGGGGACTGTCCATGATGTTCCCTCATTACAAGAGGTAAATCGCTTGATTGCCAGGAGTGAGGAGGAAGTTGAATTATTTGATCAAATGGATGAGGAATTGGATTGGATTGAAGAGATGACAAAGTATGATCAGGTGCCTAAGTGGCTTCGAGTAAGTACAAGAGAAGTAAATGCCACTATTGCTGCTTTATCAAGAAGACCATCAAAGAACACTCTGTTGGGTGGTGATGTTGGTGTAGATTCTGGTGAAATAGGATCTGAAAGGAGAAGGGGACGACCCAAGGGAAAGAAGAATCTTAATTATAAAGAGTTGGATGATGAAAATGAAGAATTCTCTGAAGCAAGTTCTGATGAAAGAAATGAATATTCAGCCCGTGAAGATGAAGGGGAAATTGGGGAATTTGAAGATGATGGGCTAAGCATGGCGGATGGAGCTCAACCCAACGGTAAGGATCAATTGGAAGAAGATAGTCCAATTTGTGATGCTGGATATGAATTCCCTCAGTCTACAGAAAATGCTAGAAACAATCTTACGGCTGAAGGATCTGGATCCCCAGGAACATCCTCAGACAGTCAAAGGATGACACAGACTGTATCTCCTTCAATTTCCTCCCAGAAATTTTGTTCCCTCTCTGCATTGGATGCCAGGCCAAGTTCCCTTTCAAAAAGGATTACTGATGAGTTAGAGGAGGGAGAAATTGCTGTATCTGGTGATTCTCACATGGATAATCAACAATCTGGGAGTTGGATTCATGATCGTGATGAGGGTGAAGACGAACAAGTTTTGCAACCTAAGATTAAGCGTAAACGTAGTCTTCGTGTTCGACCTCGTCATGCCTTGGAGAAGCCTGAGGAAAAGTCCGGTGGTGAGGTGGGATCTCTTCACCGAGGAGAATCATCTCTTTTTTCTGTTCATACAGACCATAGATATCAAGCAAAAGCAAGGACTGATCCTGAGGAAAAGTCATTTGGAGGATCCAATGCCAGCAGGCATGATCAGAACGAGTCATCCTTGAAAGTAAAGAGAAATTTACCTTCAAGGAGAGTAGCTACTACCTCCAAATTTCAGGGCTCACCTAAGTCTAGTCGATTGAACTGCATTTCTACTTCTGAGGATGGTGGACACTCAAGAGAAAGTTGGGAGGGGAAGCCTATCAACTCTAGTGGATCTTTGGCCTCATCCTCTAAAATGCCTGAAATCATCCAAAGAAGGTGCAAGAATGTAATTAGCAAGCTCCAAAGGAGAATAGACAAGGAAGGTCATCAAATTGTACCCTTGCTAAAAGATTTATGGAAACGGATTGAAAATTCAGGGTACACGGGTGGATCTGGGAGTAGTCTATTGGATTTGCGGAAGATTGACCAGAGAATTGATAGATTGGAATATAGTGGAGTGATGGAGCTTGTTTTCGATGTGCAGTTCATGCTGAAGAGTGCAATGCATTTTTACGGGTTTTCACACGAGGTAAGATCTGAAGCAAGAAAGGTTCACGATCTCTTTTTTGATATCTTGAAAATTGCTTTTCCTGATACGGATTTTCGAGAAGTAAGAAATGCACTTCCCTTCTCGGGTCAAATTTCAGCCAGTGCTGTGACATCTCCCAGACAAATGGCTGGCAGCCAAACCAAGAGGCACAGGATGATAAATGAGGTTGGAACTGATGCAAGCCCCTCACAGAAGCACCTGCAACGTGGATCTGCTTCAAGTGGGGACAACACCAGGATCAAAGTTCATATTCCACAGAAGGAATCAAAATGTGGAAATGGAGGTGGCAACAGCCGAGAACTGCCCCAGGATGATTCTCCACTGCTTACTCATCCAGGTGAACTGGTTGTATGCAAGAAGAGAAGAAATGACAGGGACAAATCCTTGGCGAAGTCTAGGTCTGGGTCAGCTGGTCCGGTCTCACCACCCAATGTGGTCCCTGCTGCAAGGAGTCCGGGGCTTGGTTCAGTCCCAAGGGATGCTAGACTGGCAATTGGCCAGCCATCTCAGCATCCGAATGGAACTGGTGAATCAGATGGCTGGGCAAGACCAGTGAAGCGATTAAGGTCAGATTCTGTGAAGAGAAGACCAAGTCATCAGTAG 6546 0.4311 MQSLQQQLLRKPEGNETFLAYQAALHGAFGPSAMQLPQQPRKFNELTQHGPNQEAQLKAQNIEQQMRNPVHQAYLQYALQAAQQKSAMAIQSQQQSKMGMLGSSSVNDQEMHMGNLKMQDLMSMQAVNEAQGSTSRNVPEQFSRGEKKIEQGKGEGKPSTQGPATTQLMPGHMIRPVQAPNPRQGIQNVMSNKIAVSAQLQAVQAWAREHNIDPSNPANANLIAQLFPMMQSRMVSQQKANESGIGAQSSLVPVSKQQVTSPAGASDSSAHANSSSDVSGLSDPAKARQIPVNHFGPPINAVKTSQSSDTAVQHFNNHGRESQVSVRQPVLVGNAMPSASSTNMNLGSDHHLNAKGALSGPEPPQMQHLRKLNQLSSQASGTTNEGSSGNYVKSQGAPSQTLQQRHGFTKQQLHVLKAQILAFRRLKKGEGTLPQELLRSISPPPLELQLQQPIHPLGMQNQDKSAGDIMPEHSRHIESDAKDLQHVPAVNGQGSSKQETFSRDEKSSLLAVHMQPKPIATKDHAPSPMLSSQKEEQQPFGCPVKLDQESERETNRNTVRNELLLDRGKAIAPQPSASESMQNKSPTQTSMVGQPKDVGSTRKYYGPLFDFPFFTRKHDSFGSSMMVSNNNNLLLAYDVKDLLAEEGTKVLDKKRRENLKKIEGLLANNSERKLIRPDLVLRLQIEEKKLHLRGLQARLRDEIDQQQQEIMAMPDRQYRKFVRLCERQRIELARQVQASQRATREKQLKSIFQWRKKLLEAHWAIRDARTARNRGVAKYHEKMLREFSKRKDDDRNKRMEALKNNDVDRYREMLLEQQTSMPGDAAERYSVVSTFLTQTEEYLHKLGSKITAAKNQQEVEEAAKAAAAAARLQACFTNPFFCSALLGLSEEEVRAAAACAGEEVMIRNRFMEMNAPKDGSSVSKYYNLAHAVNEKVVRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNNGPHLIIVPNAVLVNWKSEFYNWLPSVSCIFYVGGKDQRSKLFSQEVCALKFNVLVTTYEFIMYDRTKLSKIDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSKPFQKEGLSQNAEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGMLPPKVSTVLRCRMSAIQSAIYDWVKSTGTLRLDPEDEKRKVQKNPVYQAKQYKTLNNRCMELRKTCNHPLLNYPFFNDLSKEFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNSADSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYLEAVVDKISSYQKEDELRSGGTVDMEEELVGKDRYIGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQGTVHDVPSLQEVNRLIARSEEEVELFDQMDEELDWIEEMTKYDQVPKWLRVSTREVNATIAALSRRPSKNTLLGGDVGVDSGEIGSERRRGRPKGKKNLNYKELDDENEEFSEASSDERNEYSAREDEGEIGEFEDDGLSMADGAQPNGKDQLEEDSPICDAGYEFPQSTENARNNLTAEGSGSPGTSSDSQRMTQTVSPSISSQKFCSLSALDARPSSLSKRITDELEEGEIAVSGDSHMDNQQSGSWIHDRDEGEDEQVLQPKIKRKRSLRVRPRHALEKPEEKSGGEVGSLHRGESSLFSVHTDHRYQAKARTDPEEKSFGGSNASRHDQNESSLKVKRNLPSRRVATTSKFQGSPKSSRLNCISTSEDGGHSRESWEGKPINSSGSLASSSKMPEIIQRRCKNVISKLQRRIDKEGHQIVPLLKDLWKRIENSGYTGGSGSSLLDLRKIDQRIDRLEYSGVMELVFDVQFMLKSAMHFYGFSHEVRSEARKVHDLFFDILKIAFPDTDFREVRNALPFSGQISASAVTSPRQMAGSQTKRHRMINEVGTDASPSQKHLQRGSASSGDNTRIKVHIPQKESKCGNGGGNSRELPQDDSPLLTHPGELVVCKKRRNDRDKSLAKSRSGSAGPVSPPNVVPAARSPGLGSVPRDARLAIGQPSQHPNGTGESDGWARPVKRLRSDSVKRRPSHQ 2181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g0055 2181 SMART ultradead3 944 1133 IPR014001 -
Acco07g0055 2181 MobiDBLite consensus disorder prediction 488 507 - -
Acco07g0055 2181 SMART bromo_6 1880 1995 IPR001487 GO:0005515
Acco07g0055 2181 MobiDBLite consensus disorder prediction 1706 1722 - -
Acco07g0055 2181 MobiDBLite consensus disorder prediction 131 170 - -
Acco07g0055 2181 CDD Bromodomain 1887 1990 - -
Acco07g0055 2181 MobiDBLite consensus disorder prediction 575 596 - -
Acco07g0055 2181 PANTHER SNF2/RAD54 HELICASE FAMILY 646 1741 - -
Acco07g0055 2181 MobiDBLite consensus disorder prediction 1763 1778 - -
Acco07g0055 2181 FunFam ATP-dependent helicase BRM 939 1187 - -
Acco07g0055 2181 Gene3D - 1188 1399 IPR027417 -
Acco07g0055 2181 ProSiteProfiles QLQ domain profile. 407 443 IPR014978 GO:0005524|GO:0005634|GO:0006355
Acco07g0055 2181 MobiDBLite consensus disorder prediction 2038 2061 - -
Acco07g0055 2181 MobiDBLite consensus disorder prediction 1867 1882 - -
Acco07g0055 2181 Gene3D - 737 810 - -
Acco07g0055 2181 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1279 1456 IPR001650 -
Acco07g0055 2181 Coils Coil 1495 1515 - -
Acco07g0055 2181 FunFam ATP-dependent helicase BRM 1188 1398 - -
Acco07g0055 2181 Gene3D - 1878 1992 IPR036427 GO:0005515
Acco07g0055 2181 SMART helicmild6 1305 1389 IPR001650 -
Acco07g0055 2181 SMART QLQ_2 406 443 IPR014978 GO:0005524|GO:0005634|GO:0006355
Acco07g0055 2181 MobiDBLite consensus disorder prediction 335 349 - -
Acco07g0055 2181 MobiDBLite consensus disorder prediction 2096 2112 - -
Acco07g0055 2181 MobiDBLite consensus disorder prediction 234 282 - -
Acco07g0055 2181 MobiDBLite consensus disorder prediction 1832 1859 - -
Acco07g0055 2181 MobiDBLite consensus disorder prediction 1794 1812 - -
Acco07g0055 2181 SUPERFAMILY Bromodomain 1934 1993 IPR036427 GO:0005515
Acco07g0055 2181 MobiDBLite consensus disorder prediction 2038 2181 - -
Acco07g0055 2181 CDD SF2_C_SNF 1274 1399 - -
Acco07g0055 2181 MobiDBLite consensus disorder prediction 1555 1882 - -
Acco07g0055 2181 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 960 1125 IPR014001 -
Acco07g0055 2181 Pfam Helicase conserved C-terminal domain 1278 1389 IPR001650 -
Acco07g0055 2181 MobiDBLite consensus disorder prediction 1733 1752 - -
Acco07g0055 2181 MobiDBLite consensus disorder prediction 335 365 - -
Acco07g0055 2181 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 931 1178 IPR027417 -
Acco07g0055 2181 Coils Coil 1587 1607 - -
Acco07g0055 2181 MobiDBLite consensus disorder prediction 518 559 - -
Acco07g0055 2181 MobiDBLite consensus disorder prediction 572 597 - -
Acco07g0055 2181 Pfam SNF2-related domain 951 1255 IPR000330 GO:0005524|GO:0140658
Acco07g0055 2181 Gene3D - 939 1187 IPR038718 -
Acco07g0055 2181 MobiDBLite consensus disorder prediction 377 408 - -
Acco07g0055 2181 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1182 1520 IPR027417 -
Acco07g0055 2181 FunFam Brahma1 1882 2005 - -
Acco07g0055 2181 MobiDBLite consensus disorder prediction 234 311 - -
Acco07g0055 2181 FunFam ATP-dependent helicase BRM 736 810 - -
Acco07g0055 2181 MobiDBLite consensus disorder prediction 1654 1704 - -
Acco07g0055 2181 Pfam QLQ 408 441 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g0055 Acco-ChrAcco07 539407 549950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco07g0055 969 1430 RAD5 or RAD16-like Gene Family AT1G02670 25.655 5.44e-30 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Acco07g0055 SNF2_N 4.6e-65 CL0023