Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g0016 ATGTCTTTCACTGGAACATTGGATAAATGCAAGGCTTGCGATAAGACGGTTCATGTGGTGGACATGATGACCCTGGAGGGCACACCCTACCATAAATCCTGCTTCAAGTGCAGCCATTGCAAGGGCTTTCTCTCGATGAGCAGCTACTCGTGGATGGATGGCATCCTCTACTGCAAGCCCCATTTTGAACAGCTTTTCAAGGAATCCGGCAATTTCAGCAAGAACTTTCAGTCAGTGTGA 240 0.4792 MSFTGTLDKCKACDKTVHVVDMMTLEGTPYHKSCFKCSHCKGFLSMSSYSWMDGILYCKPHFEQLFKESGNFSKNFQSV 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g0016 79 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Acco07g0016 79 PANTHER OS06G0237300 PROTEIN 6 77 - -
Acco07g0016 79 Gene3D Cysteine Rich Protein 6 74 - -
Acco07g0016 79 FunFam LIM domain and actin-binding 1 4 74 - -
Acco07g0016 79 Pfam LIM domain 10 65 IPR001781 -
Acco07g0016 79 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Acco07g0016 79 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Acco07g0016 79 SMART lim_4 9 61 IPR001781 -
Acco07g0016 79 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g0016 Acco-ChrAcco07 209952 210477 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Acco07g0016 LIM 3.2e-13 CL0167