Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g3116 ATGGATCTTTCTTTGAGTGTTGGAAATGGCTCTGGTGATGAGCAAAACACCGCAACCTCTAATCAAACTGGAAAGAGGAGGTCTTCTCATCGTCACACTCCTCTACAGATCCAGAGACTCGAAGAGTTTTTCAATAAGTGTCCACACCCTGATGAGGAAGAACGCAGAGATTTAAGCAAGGAGCTTGGACTTAAACCCAGACAAATCAAGTTCTGGTTTCAGAACAAGAGAACTCAAACCAAGACACTAAGTGAGAGGATAGATACCAATGCTCTTCGTGCTGAGAATGAAAGGATTCAGTCAGAGAACTTAGCAATCAGGGAGTTTCTCAAGAGTAGCGTATCATGCCCTGCTTGTGGTGGTCCTTCCTATAGACATGAAGAACACAAATTTACTATGCAAAAACTGCTCCAAGAGAATGCCTATCTCAGACAAGAGTTGCTTGAATGGTTTGATTTTCAGTGTGAAAAAGCAACAAGGCTTCTGGCGGACTATGCTGGGAAACCTCTGAGGATCCAAAAGAATTTCCTAACCCTAGGAACTCCATCAACGTCATCGTCAGAGTATGCCTTGTCCATGTCCATGTCCATGTCCGGTGATAACAGTAAATTGTTGCCAAAACAAGGAAACAACAAGGCCGTAATGTGGGAGACGGCCGTTTGCGCCAGAGAAGACATGATGAGGCTTTTGTGCGTGGACGCGCCGCTCTGGATCAGCCCTGAAACATCCGCTGTGGACCACGTTGACCATGGCTTCTTCTTCCTCCCGAACCCGGAAATCTACGAAAGGATATTTCCTAAGGCTCATCATCTCCGCAAGAGGCTTACCGAGAATGCTCGTGTCGAATGCTCTAAAGCTTCTTCTGTCGTCGCCATGCCTCCCTTGCAGTTGGTTGACATGTTTCTCAACTCTGACAAATGGGTTAATATGTTCCCAACAATTGTTGGGAAAGCAAGCACATTAAAAGTGCTTGAACCTGGTGCGCTTGGGAGCAGGAATGGAGCCTTGCAACTGATGTATGAAGAACTTCACATGCTTACGCCTTTGGTGCCACCTCGTGAATTTGTGTTCCTTCGACACTGTTTCCAACCAAACCAGACAACATGGGTGATAGGTGATGTGTCGTTTGTTCCCCTTGAAGACATTGGTATTCCATATTCTTCCTCCTTCTGGAAGCTTCCTTCTGGTTGCATGATTCAAGAACTCCCCAATGGCTTCTCCAAGGTTACGTGGGTGGAACATGTGGAGGTGAAGCATGAGAGCCTAATAGTGCACATGCTATACAGAAACCTTGTGTTTAGTAGAGTTGCTTATGGAGCTCAACGATGGGTGGTGGCACTTGAGAGAATGTGTGAGAGAACTGGAAGCTTCTTAAGCCCTCACATTCCTTATAAGGAAGCAACTTCAGTGATGATGAGAATACCAGAGGGAAGAAGCAGCGTGATGAGGCTTGGGCAAAGGATGATGAAGAGCTTCTCTAGAGTGATAAGCATGAAGAGTGCTATTAATGGTGGAGATATAAGTGAAGAGAATATTAATATCAATAATATTAATAATAATAATGAGATTGGTATCAGAGTGTTCAGTCGCAACAACTTTGAGAGAGGTGAGCCGCATGGCATTACTCTCACTGCTGCTGTTCCTATTTGGCTTCCTCTTCCTCCCAACGATGTCTTCCACTACCTTCGCGACGTCTCTCGCCGGTTTCAGTGGGATGTTCTGTGCACTGAAAATGTAGAGCAAGAGGTTGTTCGCATCTCAACTGGAACTCATCGTGCATGCTACACATCAGTTATCCAGGCATACTGTGAGAATGACGACGACGTTGCGATTGTTCAAGAAACTTGTGTTGAACCAATGGGATGTGTCCTTGTGTATGCTCCGGTGGATAAAGTGGCGATGAAGGCGGTGATGCAAGGTGGGGATTCGACTGACTTGACGATGCTGCCGTCCGGCTTTGTGGTCATGAGGGACAGCATGGGAATACCCAATGGCGGCGCCTGTGGCGGTTCTTCTTCCAGCAGCGGAGGGTCAATACTGACGATGACTTTACAGATTCTAGTGAGCGACGACAGCATGGACAGGAGGAGCTTGAGCATGGAGAGTGTGACCACCGTGAACCACCTCGTGACCACCACAGTGGACAAGATCAAGTTTGCTCTCATGAATAATAATTAG 2178 0.4656 MDLSLSVGNGSGDEQNTATSNQTGKRRSSHRHTPLQIQRLEEFFNKCPHPDEEERRDLSKELGLKPRQIKFWFQNKRTQTKTLSERIDTNALRAENERIQSENLAIREFLKSSVSCPACGGPSYRHEEHKFTMQKLLQENAYLRQELLEWFDFQCEKATRLLADYAGKPLRIQKNFLTLGTPSTSSSEYALSMSMSMSGDNSKLLPKQGNNKAVMWETAVCAREDMMRLLCVDAPLWISPETSAVDHVDHGFFFLPNPEIYERIFPKAHHLRKRLTENARVECSKASSVVAMPPLQLVDMFLNSDKWVNMFPTIVGKASTLKVLEPGALGSRNGALQLMYEELHMLTPLVPPREFVFLRHCFQPNQTTWVIGDVSFVPLEDIGIPYSSSFWKLPSGCMIQELPNGFSKVTWVEHVEVKHESLIVHMLYRNLVFSRVAYGAQRWVVALERMCERTGSFLSPHIPYKEATSVMMRIPEGRSSVMRLGQRMMKSFSRVISMKSAINGGDISEENININNINNNNEIGIRVFSRNNFERGEPHGITLTAAVPIWLPLPPNDVFHYLRDVSRRFQWDVLCTENVEQEVVRISTGTHRACYTSVIQAYCENDDDVAIVQETCVEPMGCVLVYAPVDKVAMKAVMQGGDSTDLTMLPSGFVVMRDSMGIPNGGACGGSSSSSGGSILTMTLQILVSDDSMDRRSLSMESVTTVNHLVTTTVDKIKFALMNNN 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g3116 725 ProSiteProfiles 'Homeobox' domain profile. 23 83 IPR001356 GO:0003677
Acco06g3116 725 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 25 721 IPR042160 -
Acco06g3116 725 SUPERFAMILY Bet v1-like 524 689 - -
Acco06g3116 725 Gene3D - 269 449 IPR023393 -
Acco06g3116 725 SMART START_1 238 453 IPR002913 GO:0008289
Acco06g3116 725 SMART HOX_1 25 87 IPR001356 GO:0003677
Acco06g3116 725 CDD homeodomain 26 81 IPR001356 GO:0003677
Acco06g3116 725 MobiDBLite consensus disorder prediction 1 24 - -
Acco06g3116 725 ProSitePatterns 'Homeobox' domain signature. 58 81 IPR017970 GO:0000981|GO:0006355
Acco06g3116 725 Pfam START domain 270 453 IPR002913 GO:0008289
Acco06g3116 725 Gene3D - 8 87 - -
Acco06g3116 725 Pfam Homeodomain 26 81 IPR001356 GO:0003677
Acco06g3116 725 ProSiteProfiles START domain profile. 208 456 IPR002913 GO:0008289
Acco06g3116 725 CDD START_ArGLABRA2_like 212 452 - -
Acco06g3116 725 MobiDBLite consensus disorder prediction 1 35 - -
Acco06g3116 725 SUPERFAMILY Bet v1-like 280 454 - -
Acco06g3116 725 SUPERFAMILY Homeodomain-like 13 82 IPR009057 -
Acco06g3116 725 FunFam Homeobox-leucine zipper protein HDG1 12 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g3116 Acco-ChrAcco06 41479916 41486219 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g3116 25 721 Homeobox Transcription Factor Family AT1G73360 39.752 6.17e-160 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Acco06g3116 START 1.4e-32 CL0209