Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g3007 ATGGCTCATTCAGTTGAACCATCCTCATCTTTGAGCTTTACTTCATCTTCCCGTTTATCAAATGGCTCAGTTAGCCATAATGTATGTGCTTCCCCTTGCCCTGATCCTGGACACAACCTTGAAGCAATCAGTTTGAGTAAGCTCAGCTCTAATTTAGAGCAGCTTTTGGATGATTCTTATTGTGATTACAGTGATGCTGACATAATTGTTGAAGGAATTCCAGTTGTTGTTCATCGATGTATTCTTGCCTCTAGAAGCAAGTTTTTTCATGAGTTATTCAAGAGGGAGAAAGGACCTCAAGAGAAGGAAGGCAAATTAAAGTATTTGATGAGTGATTTCTTGCCTTATGGCAAGATTGGATATGAAACCTTCCTCATTTTTTTGGGATATGTGTATACTGGGAAACTCAAGCCCTTTCCAATGGAGGTGTCAACATGTATTGACAATGTATGTGCCCATGATGCTTGTCGGCCCGCAATTAATTTTGTTGTTGAGCTGATGTATGCATCTTCCATTTTTCAAATGCCTGAACTGGTATTACTTTTCCAGCGACGTCTTATTAATTTTGTAGGGAAGGCTTTTGTGGAAGATGTTATACCAATCCTCATTGTTGCTTTCCATTGTCAATTGAGTCAACTCATCACTGAATGCATTGAACGGGTGGCACGATCAGACCTAGACTATGTCTCAATTGATAAGGAGATTCCCCCTGAACTCTCAGAGAAAATTAAACAACTTCAGCGCAACGCCCAGCATGATATTGAAGATGAGGCTTCTTTGGCGGATCCATTGCATCAAAAGAGAATCACTAGAATACACAAGGCTCTGGACTCAGATGATGTTGAGCTTGTTAAACTTCTTTTATCTGAGTCTGATATAACTTTAGATGAAGCCAATGCTCTGCATTACGCTGCAGCGTACTGTGATCCTAAGGTTTTCTCTGAGATACTTAATTTGGGTCTGACTAACGTCAATCTTCGGAATTCTCGAGGATATACTGTTCTTCATATTGCTGCCATGCGTAAGGAGCCTTCAATTATAGTTTCACTTCTTAAAAAGGGGGCTCATGCATCAGAATTGACTTTGGATGGTCAAAGTGCTGTAAGCATCAGCCGGAGGTTAACAAGGTCAAAGGATTACCATGCAAAAACAGAACAGGGGAAGGAAACAAACAAAGACCGAATGTGTATTGATCTTCTTGAAAGAGAAATGCTGAGAAATCCGATGTCTGGTGATGCTTCTATGTCTTTCCAAATAATGGGTGATGATCTGCACAGGAAGCTGCAATACCTTGAGAACAGAGTGGCATTGGCAATATTGTTCTTCCCTGCGGAAGCCAAAGTAGCCATGGACATTGCAGAGGCTGAGACAAAAGGCTCAAGTGGGAATTTCAGGGAGGTTGATCTTAATGAGACTCCCATACTGCAAAACAAAAGACTTCTTTCCAAGGCGGAAGCCCTTATGAAAACAGTGGAGACGGGCCAACGATACTTTCCTCATTGCTCGGAAGTACTGGTGAAGTTCATGGAGGATGAGCTGCCTGATTTGTGTTACCTTGAGAAGGGTTCTCAAGAAGAGCAGAGAATGAAGACAAGATTCATGGAGCTTAAAGACAATGTTCAAAAGGCCTTCAACAAGGACAAAGCCAATTTTTGCCACTCTGGGATTTCTCCTTCATCTTCCTCATCTTCCCTCAACAATAATCCTGTGCATGGCAAGGCAAGAAAAGTGTGA 1734 0.4164 MAHSVEPSSSLSFTSSSRLSNGSVSHNVCASPCPDPGHNLEAISLSKLSSNLEQLLDDSYCDYSDADIIVEGIPVVVHRCILASRSKFFHELFKREKGPQEKEGKLKYLMSDFLPYGKIGYETFLIFLGYVYTGKLKPFPMEVSTCIDNVCAHDACRPAINFVVELMYASSIFQMPELVLLFQRRLINFVGKAFVEDVIPILIVAFHCQLSQLITECIERVARSDLDYVSIDKEIPPELSEKIKQLQRNAQHDIEDEASLADPLHQKRITRIHKALDSDDVELVKLLLSESDITLDEANALHYAAAYCDPKVFSEILNLGLTNVNLRNSRGYTVLHIAAMRKEPSIIVSLLKKGAHASELTLDGQSAVSISRRLTRSKDYHAKTEQGKETNKDRMCIDLLEREMLRNPMSGDASMSFQIMGDDLHRKLQYLENRVALAILFFPAEAKVAMDIAEAETKGSSGNFREVDLNETPILQNKRLLSKAEALMKTVETGQRYFPHCSEVLVKFMEDELPDLCYLEKGSQEEQRMKTRFMELKDNVQKAFNKDKANFCHSGISPSSSSSSLNNNPVHGKARKV 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g3007 577 PANTHER REGULATORY PROTEIN NPR3 10 568 IPR044292 GO:0009862|GO:2000022|GO:2000031
Acco06g3007 577 SMART ANK_2a 330 362 IPR002110 GO:0005515
Acco06g3007 577 SMART ANK_2a 296 326 IPR002110 GO:0005515
Acco06g3007 577 SMART ANK_2a 267 295 IPR002110 GO:0005515
Acco06g3007 577 Gene3D - 263 404 IPR036770 -
Acco06g3007 577 FunFam regulatory protein NPR3-like 264 404 - -
Acco06g3007 577 Gene3D Potassium Channel Kv1.1; Chain A 38 222 IPR011333 -
Acco06g3007 577 FunFam Regulatory protein NPR3 38 222 - -
Acco06g3007 577 ProSiteProfiles Ankyrin repeat profile. 330 362 IPR002110 GO:0005515
Acco06g3007 577 Pfam BTB/POZ domain 62 178 IPR000210 GO:0005515
Acco06g3007 577 Pfam Ankyrin repeats (3 copies) 273 357 IPR002110 GO:0005515
Acco06g3007 577 ProSiteProfiles BTB domain profile. 64 140 IPR000210 GO:0005515
Acco06g3007 577 SUPERFAMILY Ankyrin repeat 265 371 IPR036770 -
Acco06g3007 577 MobiDBLite consensus disorder prediction 555 577 - -
Acco06g3007 577 Pfam NPR1/NIM1 like defence protein C terminal 372 563 IPR021094 -
Acco06g3007 577 CDD BTB_POZ_NPR_plant 47 190 - -
Acco06g3007 577 SMART BTB_4 64 190 IPR000210 GO:0005515
Acco06g3007 577 ProSiteProfiles Ankyrin repeat region circular profile. 330 355 - -
Acco06g3007 577 SUPERFAMILY POZ domain 47 188 IPR011333 -
Acco06g3007 577 MobiDBLite consensus disorder prediction 555 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g3007 Acco-ChrAcco06 37956170 37961093 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Acco06g3007 NPR1_like_C 2.8e-75 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco06g3007 06 37956170 37961093 Acco06g3007 06 37956170 37961093 ECH