Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g2980 ATGGCGATATCTTCCGGAGAGGGACCAAGCAGGACCAACACCCCTCGAATTCGAAAGCGACCTGGGATTACAATTCGTTACACAAGTAGAGAGTCCGAGGAACGACATGTCGTAGAGGCCCAAGGTGGGAGCACCAACCGCGAAGATCATGATGAACGCGATGCCGGAGAAGGAAGGGAACGGCAGAATGAAGAGATTGAAGAAGAAGCAGAAGACGCCGTCGCCGCCGAAAAAGAAGAATCAGAAGAAAATGGGTCCATTCCTGTGACTCTCACCGATCCTCATATTCTTAATTGCTGCATTTGCTGTCAGCCCTTGACCCTTCCTGTATTTCAGTGTGAGAATGGGCATATCGCATGCTCTACCTGCTGTGTCCAACTTGCCCATAAGTGTCATTCGTGCACGGCGCCCATTGGCAACATCCGTTGCCGAGCCATTGAGAAGATGTTGGAATCTCTTAAAATATCATGCCGCTATGCAAGACATGGCTGTATAGAGAAAATAACTCACATCAACAAAAGTATCCATGAGAAAGATTGCATCTACACCCCATGTTGGTGCCCTATTGATGGTTGCCAGTTCACTGCTCCAAGCAAGAAGTTGTCCCAGCACATCAACAATGAGCATCATGGAAGCTTTATAAACTTTTATTATGATAGCTTCCTGTATCTCACGTTGGGGCTCAAGCAGAAAGTCGTTGTCCTTAAAGAGGTAAATGACTCTAATATATTTATTATAAAAAACGACCTGGAGTTTTTGGGGAATGCGATCAAAGTCTTTCACATTGGCCCCAAGTCATCGGCTGAGACATATCGGTATGATCTTTATGCTAGATCACAGGGATGCAGTCTGAAACTAGATTCTTTTGTCAATCATACTCTTGGCAACAACTTTCCCGCTACAACAAAGTTCCTTCTGGTTCCAATTGATTTTCTCGGCTCTTCTCCAGAAGTCAATATAGAAATTCGCATATATAAAGTGTATGAATCAAGCAGGCGCGAGTAA 1005 0.4488 MAISSGEGPSRTNTPRIRKRPGITIRYTSRESEERHVVEAQGGSTNREDHDERDAGEGRERQNEEIEEEAEDAVAAEKEESEENGSIPVTLTDPHILNCCICCQPLTLPVFQCENGHIACSTCCVQLAHKCHSCTAPIGNIRCRAIEKMLESLKISCRYARHGCIEKITHINKSIHEKDCIYTPCWCPIDGCQFTAPSKKLSQHINNEHHGSFINFYYDSFLYLTLGLKQKVVVLKEVNDSNIFIIKNDLEFLGNAIKVFHIGPKSSAETYRYDLYARSQGCSLKLDSFVNHTLGNNFPATTKFLLVPIDFLGSSPEVNIEIRIYKVYESSRRE 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g2980 334 MobiDBLite consensus disorder prediction 24 63 - -
Acco06g2980 334 CDD RING-HC_SIAHs 97 134 - -
Acco06g2980 334 ProSiteProfiles Zinc finger SIAH-type profile. 152 210 IPR013010 GO:0008270
Acco06g2980 334 Coils Coil 59 83 - -
Acco06g2980 334 SUPERFAMILY TRAF domain-like 152 322 - -
Acco06g2980 334 Pfam Seven in absentia protein family 141 285 IPR018121 GO:0005737|GO:0006511|GO:0007275
Acco06g2980 334 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 36 327 IPR044286 -
Acco06g2980 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 205 IPR013083 -
Acco06g2980 334 MobiDBLite consensus disorder prediction 1 87 - -
Acco06g2980 334 MobiDBLite consensus disorder prediction 64 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g2980 Acco-ChrAcco06 37400098 37403003 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g2980 40 209 C3H Transcription Factor Family AT2G41980 30.233 6.90e-21 89.7