Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g2979 ATGGCGATATCCCCAGGAGAGGGACCAAGCAGGAACAACAACTCTCCAATTCGAAAGCGACCTAGGATTACAATTCGCTACAGAAGTAGAGAGTCCGGGGAACGACATGTCGTAGAGGCACAAGATGGGTGCACCAACCACGAAGATCGTGAAAGCAACACGGAAGAAGAAAGAGAACGGCAAAATGAAGAGACTAGAGAAGACGCTGAAGAAGCAGAAGATGCTGACGCCGAAGAAGAAGCAGTAGGCGTCCAAGAAGAAGAAGAAGAAGAAGAAGAAGAATCAGTAGAATCAGAAGAGGTCTACGAAGTGGTTGACATCGAAGAGGAAGTCGCTTCTGGAGGAGACGGTGATGGTGGTAGGGATGGTTCAATTTCTGTGACTCTCACCGATCAAGATATTCTCAATTGCTGCATTTGCTGTGAGCCTTTGACTACTCCTGTATTTCAGTGTGAGAATGGACATATTGCATGCTCTACCTGCTGTGTCCGAATTGCCCATAAGTGTCATTCATGCCGGGAACCCATCGGCCACATCCGTTGCCGAGCCATAGAGAAGGTTGCAGAATCTATTAAATTATCATGCCGCTATGCAAGACATGGATGTATAGAGAAAACTACTCGCATCAACAAAAGTATCCATGAGAAAGATTGCGTCTACATCCCATGTTGGTGCCCAATTGATGGTTGCCAGTTTACTGCTCCAAGCAAGACGTTGTCTCAGCACATCAACCATGAGCATCACGGAAGCTTTATAGACTTTCATTATGATAGCTACTTCTATGTCAAGTTGGGGCTCAACCAGAAAGTCGTTGTTCTTAAAGAGCTAACTGACTCTAATTTATTTATTATAACAAACCGTCAGGAGCGTGTGGGCAATATGTTCCATGTCTTTCATATTGGCCCCAAGTCATCGGCTGAGATGTATCAGTATGAACTTTGTGCTAGATCACAGGGAAGCTGTCTGAAAGTGGAATCTTTTGTCAATCACTCCCTTGGCAACAATTTTCCTGCTACAACAAAGTTCCTTCTGGTTCCAACTGATTTTCAAGGTCCTTCTTCTCCAGCAGTCAAGATAGAAATTCGCATATATAAAGTCGATGAATCCAGTACGTGCGGGTGA 1122 0.4474 MAISPGEGPSRNNNSPIRKRPRITIRYRSRESGERHVVEAQDGCTNHEDRESNTEEERERQNEETREDAEEAEDADAEEEAVGVQEEEEEEEEESVESEEVYEVVDIEEEVASGGDGDGGRDGSISVTLTDQDILNCCICCEPLTTPVFQCENGHIACSTCCVRIAHKCHSCREPIGHIRCRAIEKVAESIKLSCRYARHGCIEKTTRINKSIHEKDCVYIPCWCPIDGCQFTAPSKTLSQHINHEHHGSFIDFHYDSYFYVKLGLNQKVVVLKELTDSNLFIITNRQERVGNMFHVFHIGPKSSAEMYQYELCARSQGSCLKVESFVNHSLGNNFPATTKFLLVPTDFQGPSSPAVKIEIRIYKVDESSTCG 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g2979 373 CDD RING-HC_SIAHs 135 173 - -
Acco06g2979 373 MobiDBLite consensus disorder prediction 26 65 - -
Acco06g2979 373 Pfam Seven in absentia protein family 179 328 IPR018121 GO:0005737|GO:0006511|GO:0007275
Acco06g2979 373 ProSiteProfiles Zinc finger SIAH-type profile. 190 248 IPR013010 GO:0008270
Acco06g2979 373 MobiDBLite consensus disorder prediction 66 104 - -
Acco06g2979 373 Coils Coil 44 94 - -
Acco06g2979 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 243 IPR013083 -
Acco06g2979 373 SUPERFAMILY TRAF domain-like 190 362 - -
Acco06g2979 373 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 69 367 IPR044286 -
Acco06g2979 373 MobiDBLite consensus disorder prediction 1 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g2979 Acco-ChrAcco06 37372847 37375032 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g2979 93 263 C3H Transcription Factor Family AT2G41980 34.444 3.23e-22 94.0