Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g2978 ATGGCGATATCTCCAGGAGAGGGACCAAGCAGGAACAACAACTCTCCAATTCGAAAGCGACCTAGGGTTACAATTCCCTACAGAAGTAGAGAGCCCGGTGAACGACATGTCGTACAGGCACAAGGTGGGTGCACCAACCACGAAGATCGTGAAAAAAACACGGGAGAAGAAAGAGAATGGCAAAATGAAGAGACTAGAGAAGACGCTGAAGAAGCAGAAGATGCTGAATCTGAAGAAGAAGCAGAAGATGCTGACTCCGAAGAAGAAGCAGAAGATGCTGACTCCGAAGAAGAAGAAGATGCTGACTCCGAAGAAGAAGTAGGCGTCCAAGAAGAAGAAAAATCAGAAGAGGTGTATGAAGTGGTTGATATCGAAGAGGAAGTCGCTTCTGAAGGAGACGGTGGTGGTGGTGGGGATGGATCAATTTCTGTGACTCTCGCCGATCCAGATATTCTCAATTGCTGCAATTGCTGTGAGCCTTTGACTACTCCTGTATTTCAGTGTGAGAATGGACATATTGCTTGCTCTACCTGCTGTGTCCGAATGGCCCATAAGTGTTATTTATGCCGGGAGCCCATCGGTCACATCCGTTGCCGAGCCATAGAGAAGGTTATAGAATCTATTAAATTATCGTGCCGCTATGCAAGACATGGATGTATAGAGAGAACTACTCTCATCAACAAAAGTATCCATGAGAAAGATTGCATCTACATCCCATGTTGGTGCCCTATTGATGGTTGCCAGTTTACTGCTCCAAGCAAGAAGTTGTCCCAGCACATCAACCATGAGCATCACGGAGGCTTTATAAGCTTTCATTTTGATAGCTTCCTCTATGTCAATTTTGGGCTCAACCAGAAAGTCGTTGTTCTTAAAGAGCCAACTGACTCTAATTTATTTATTATAACAAAGCGTCGGGAGCATCTGGGCAATATGTTCAATGTCTTTCATATTGGCCCCAAGTCATCGGCTGAGATGTATCGGTATGAGCTTTATGCTAGATCACAGGGATGCTATCTGAAACTGGAATCTTTTGTCAATCACACCCTTGGCAACAATTTTCCTGCTACAACTAAGTTCCTTCTGGTTCCAACTGATTTTCTTGGTCCTTCTCCAGCAGTCAAGATAGAAATTTGCATATATAAAGTGCATGAATTCGGTACGTGCGGCCCATTTTCCTGTGAACGATGTGTTCATTTCAAGTGGCTCAATTACTAA 1215 0.442 MAISPGEGPSRNNNSPIRKRPRVTIPYRSREPGERHVVQAQGGCTNHEDREKNTGEEREWQNEETREDAEEAEDAESEEEAEDADSEEEAEDADSEEEEDADSEEEVGVQEEEKSEEVYEVVDIEEEVASEGDGGGGGDGSISVTLADPDILNCCNCCEPLTTPVFQCENGHIACSTCCVRMAHKCYLCREPIGHIRCRAIEKVIESIKLSCRYARHGCIERTTLINKSIHEKDCIYIPCWCPIDGCQFTAPSKKLSQHINHEHHGGFISFHFDSFLYVNFGLNQKVVVLKEPTDSNLFIITKRREHLGNMFNVFHIGPKSSAEMYRYELYARSQGCYLKLESFVNHTLGNNFPATTKFLLVPTDFLGPSPAVKIEICIYKVHEFGTCGPFSCERCVHFKWLNY 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g2978 404 MobiDBLite consensus disorder prediction 63 121 - -
Acco06g2978 404 Coils Coil 62 89 - -
Acco06g2978 404 ProSiteProfiles Zinc finger SIAH-type profile. 207 265 IPR013010 GO:0008270
Acco06g2978 404 Pfam Seven in absentia protein family 196 343 IPR018121 GO:0005737|GO:0006511|GO:0007275
Acco06g2978 404 SUPERFAMILY TRAF domain-like 207 379 - -
Acco06g2978 404 CDD RING-HC_SIAHs 152 190 - -
Acco06g2978 404 MobiDBLite consensus disorder prediction 1 121 - -
Acco06g2978 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 260 IPR013083 -
Acco06g2978 404 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 90 383 IPR044286 -
Acco06g2978 404 MobiDBLite consensus disorder prediction 45 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g2978 Acco-ChrAcco06 37237513 37239836 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g2978 119 264 C3H Transcription Factor Family AT2G41980 34.228 2.32e-19 86.3