Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g2976 ATGGAACAGTCGAAATTGGCTGCAGAATCTCCCTACAAGGAGATATCTGCCAGATGGGATCCAGATGAAGCATGCTTGCCCTTAATTGATGGCGCACCTGTATTTCATCCGACCGCCGAGGAGTTTAGAGACACCCTTGGTTACATAGCAAAGATACGCCCCCTGGCTGAACCCTTCGGCATATGTAGGATAGTCCCTCCACCTTGCTGGAATCCACCCTGCCCTCTTAAGGAGAAAGATGTTTGGGAAAATGCTAAATTTTCCACCCGCATTCAGCAGATTGACTTACTTCAGAATAGAGAGCCCATGAGAAAGAAAAGCAGGGGAAGGAAACGAAAACGTAGAAAGAACTCTAAAATGACAACCTGTAGAAGATTTGCTAATCCTGATTCAGAAGTTAATGCTGCTTCTGAATCTGATGAAAAATTTGGCTTCCAATCAGGACCAGACTTCACACTTAAAGACTTTCAACAATATGCTGCTTTTTTTAAAGAATGCTACTTTGGGATGAAGGATATCAAAGGCAATGGACAAGTTAGCGATAATAATTATCAGAAAAGGTGGGAGCCCTCTGTGAAGGAAATTGAAGGTGAATACTGGCGAATAATTGAGCAACCAACTGATGAGGTCGAGGTGCATTATGGAGCTGACCTAGAAACTGGGTCACTTGGAAGTGGTTTTCCAAAGGCTGATTCCTTAACTAAGAGTGACTTGGATGAGTATGCACTATCTGGCTGGAATCTTAATAACTTCCCACGGCTTCCAGGTTCTGTGCTCTGTTTTGAAGGGAGTGAAATTTCAGGAGTTCTAGTTCCTTGGCTCTATGTTGGGATGTGTTTTTCAACATTTTGCTGGCATGTCGAGGATCATCACCTTTATTCACTAAATTATTTGCACTGGGGCGATCCAAAAGTATGGTATGGAGTACCTGGCAGCCATGCTACAGCTTTGGAGGGTACAATGAGGAAGCATATGCCTGATTTGTTTGAGGAGCAACCTAATTTGCTCAATGAACTGGTCACTCAACTATCGCCTTCAATTCTTAAATCTGAGGGAGTGCCTATATTTCGCACCGTCCAGCATTCTGGGGAATTTGTGATGACCTTTCCAAGAGCATACCATGCTGGCTTCAATTGTGGTTTCAACTGTGCAGAGGCCGTGAATGTTGCCCCTGTAGATTGGTTACTGCATGGCCAGAATGCTGTTGAACTTTATAGTAAGCAGTGCCGTAAAACATCATTGTCACATGACAAGTTGTTATTAGGATCAGCTCAGGAAGCTATACAAGCCCTTGCAGCTGTCTTTTTTGATGGAAAAGAGACTCCAAAAAATTTGAAATGGAGAAGTGTTTGTGGGAAAGATGGTGTCCTTACAAATGCAATTAAGGCAAGGATAAAGATTGAGGAAGAGCGACTACAACGTCTTCAAACACCCATAAAATTGGTGAAAATGGACATCAACTTTGACTTGGATAAGGAAAGAGAATGCTTTGCTTGCTTCTACGATTTGCACCTTTCCGCTGTAGGTTGCCAATGCTCTGTTGATAAATACTCTTGTCTAAGACACTCAAAATCGTTTTGCTCATGTGGGTGTGATGAAAGATTTGTTCTATTTCGTTATACCATAGAGGAGCTAAAAGAGTTGGTTAGAGCATTAGAAGGAGCATTAGAAGCTATCAAGGTTTGGACAAATAGGAGCTCTGGAATGGTTTCTGTAGATGGTGGGGATGTTTGTTTAGATAAGCCATATGTGAGCAGAGGCATGTGCAAAACTAAGATCAATGAAGTAGAAAGTTCATCTTCTTGTGCAAGAATCAAGAAGTCAAAACTAAATGAAGATCCTCATGGTCATTTTTCTTCAGAATTGGTCCAGTCAGACTCTCAAGTGGAAAGTGCACCACATCACATTGTTGATAGTCATAATGACAATTTTAATGGCAAAAGTTTGGTTATGGATAATGACATTAAGTTTGCATGGAATTGTTCTATGGGTTTAAATCTTAATGCCATGTCTGATCAAAATGAAAGTTATATCCTTCATAGTGCTGATAGCGAAACAAACAAGGGTATTGGTTGTGTTGAAAAAGTCTGCTACCCAGAACAAAAGGAACAAGAACATGTGGTACTTGATGGTGAAGGAAATGTATCAGACATGTTTACTCCAGTGAAGAAAGAATACCCATCGTGTTCTAGGGGAACTTCTAGTAAAGTTGATGCTGGCAAGAGGGATGATCTAGTAATGCATCATGATATGGGGCTGCTACCTAACAATGAATGTAAAATGGAGGCAATAAACAGTTTCAACAAAAACACATCTTTGACAAACCAAAGCTTTCTAATTCAGAAGTTTGTGACATCCGTTGAGCCTGTAAGCCTAGGCTCCATTGTGCATGGAAAGCTGTGGTGTACTAAGCACATGATATATCCAAAAGGATTCAAGAGTCGTATCAAGTTCTTTAGCATGCTTAATCCATCAAGAATCTGTAGCTATGTTTCTGAAGTTGTTGATGGTGGCTTAATTGGACCCCTTTTCAAGGTTAGCTTGGAAGAACATCCAAGTGAAAATTTCATGACCATGTCGGCAGAGAAGTGCTGGGAATCAGTGCTGCAGAAAGTAAATCGTGAGATCATCAAGCGTAAAAGCCTTGGGGAAGTAAAACTTCCTCCGTTGGAGCTTCTGCAAATCATCAATGGTTTACAAATGTTCGGGTTCCTTTCTCCATCAATCATCCAGGGTATTGAAGCTCTGGATCCCAGTCATCAATGCATGGAATACTGGAATCACAAGGAATTAATCCCTTCCGTATCTTCCAGCACTACAAGTGATAACGTTAAGCTTGGGCGCGGGGGTTCAAGTAGCCTATCTGATGATGTTGAGACCAAAGTTTTTGGTATCGATATAACAAAGAAGGATGAAGATGATAATAAACCTTTAGGGGCAAAACGGGACTCATTCGAAGGGATGAAACTCGTACTCGAAGGATTGTTGAAGAAGGCGAACCTGGATGAGTTAATCACAATGCAGAAGTTATTGGGGTCTGATGCACAAAGTTCTCAGTGGAGAGTGGAAATTGCGGCTCTGATTGAGGAGATCCAGAAAAGCATGTAG 3108 0.4147 MEQSKLAAESPYKEISARWDPDEACLPLIDGAPVFHPTAEEFRDTLGYIAKIRPLAEPFGICRIVPPPCWNPPCPLKEKDVWENAKFSTRIQQIDLLQNREPMRKKSRGRKRKRRKNSKMTTCRRFANPDSEVNAASESDEKFGFQSGPDFTLKDFQQYAAFFKECYFGMKDIKGNGQVSDNNYQKRWEPSVKEIEGEYWRIIEQPTDEVEVHYGADLETGSLGSGFPKADSLTKSDLDEYALSGWNLNNFPRLPGSVLCFEGSEISGVLVPWLYVGMCFSTFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSHATALEGTMRKHMPDLFEEQPNLLNELVTQLSPSILKSEGVPIFRTVQHSGEFVMTFPRAYHAGFNCGFNCAEAVNVAPVDWLLHGQNAVELYSKQCRKTSLSHDKLLLGSAQEAIQALAAVFFDGKETPKNLKWRSVCGKDGVLTNAIKARIKIEEERLQRLQTPIKLVKMDINFDLDKERECFACFYDLHLSAVGCQCSVDKYSCLRHSKSFCSCGCDERFVLFRYTIEELKELVRALEGALEAIKVWTNRSSGMVSVDGGDVCLDKPYVSRGMCKTKINEVESSSSCARIKKSKLNEDPHGHFSSELVQSDSQVESAPHHIVDSHNDNFNGKSLVMDNDIKFAWNCSMGLNLNAMSDQNESYILHSADSETNKGIGCVEKVCYPEQKEQEHVVLDGEGNVSDMFTPVKKEYPSCSRGTSSKVDAGKRDDLVMHHDMGLLPNNECKMEAINSFNKNTSLTNQSFLIQKFVTSVEPVSLGSIVHGKLWCTKHMIYPKGFKSRIKFFSMLNPSRICSYVSEVVDGGLIGPLFKVSLEEHPSENFMTMSAEKCWESVLQKVNREIIKRKSLGEVKLPPLELLQIINGLQMFGFLSPSIIQGIEALDPSHQCMEYWNHKELIPSVSSSTTSDNVKLGRGGSSSLSDDVETKVFGIDITKKDEDDNKPLGAKRDSFEGMKLVLEGLLKKANLDELITMQKLLGSDAQSSQWRVEIAALIEEIQKSM 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g2976 1035 SMART JmjN_1 31 72 IPR003349 -
Acco06g2976 1035 SMART fyrc_3 843 935 IPR003889 GO:0005634
Acco06g2976 1035 Pfam F/Y rich C-terminus 841 927 IPR003889 GO:0005634
Acco06g2976 1035 Gene3D Cupin 17 390 - -
Acco06g2976 1035 Pfam JmjC domain, hydroxylase 273 389 IPR003347 -
Acco06g2976 1035 ProSiteProfiles FYR domain FYRN motif profile. 779 837 IPR003888 GO:0005634
Acco06g2976 1035 ProSiteProfiles JmjN domain profile. 32 73 IPR003349 -
Acco06g2976 1035 ProSiteProfiles JmjC domain profile. 240 406 IPR003347 -
Acco06g2976 1035 SUPERFAMILY Clavaminate synthase-like 246 428 - -
Acco06g2976 1035 Pfam C5HC2 zinc finger 496 548 IPR004198 -
Acco06g2976 1035 PANTHER LYSINE-SPECIFIC DEMETHYLASE 29 743 - -
Acco06g2976 1035 Pfam jmjN domain 33 66 IPR003349 -
Acco06g2976 1035 MobiDBLite consensus disorder prediction 98 121 - -
Acco06g2976 1035 MobiDBLite consensus disorder prediction 104 121 - -
Acco06g2976 1035 Pfam F/Y-rich N-terminus 790 834 IPR003888 GO:0005634
Acco06g2976 1035 Gene3D - 784 923 - -
Acco06g2976 1035 ProSiteProfiles FYR domain FYRC motif profile. 839 929 IPR003889 GO:0005634
Acco06g2976 1035 SMART cupin_9 240 406 IPR003347 -
Acco06g2976 1035 SMART fyrn_3 793 837 IPR003888 GO:0005634
Acco06g2976 1035 FunFam Putative lysine-specific demethylase JMJ16 785 923 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g2976 Acco-ChrAcco06 37107003 37114344 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g2976 785 967 JUMONJI Transcription Factor Family AT1G30810 50.273 1.17e-50 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Acco06g2976 JmjC 3e-45 CL0029