Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g2886 ATGGGGAGAGGAAGATTGGCAATGAAATTGATAGAGAAAGAGAAATCAAGAAAGGCAACGTTTCAGAAGAGAAAGAATGGAATTATGAAGAAAGCTCATGAGCTATCTACTCTCTGTGGAGTTGATTGTTGCTTGATTGTTTATAGCCCTAACTCCATTAACGACCTTCCTGAGATTTGGCCTCAAGATCGCATACAGGTGCGAAGAATCATTGAGAAGTACAACGCAAAGATAGCTGAGAAAAGTCCTAAGAAGTACAACGTGATGGAGTTCTTCAAGGACAGGAAGAACAGGGTGGAAGCCGAAGCGTGCAAGCTCCGGCAAGAGAGGCTCCGGAAACTCTATCCAACGTGGGACTTCACTTTCGACAAACTTGGCGAAGAACAGCTGAGAATGTTTGTCGCCCTCTTGGATTCCAGAATCGAGGATTGCAAAGAGAGGATCAACATGTTGAAGAAGAAATGTTACATTGAGGAAAAACAACAACAACAAATAGCTGAATCATCCTCAGACAAATCATCAGCTTCAGCTTCAAACCGAGACCATCTTAGTTTCATTCACAACAACAGTAGTACTACTACGTTTTCAGCTCATCATCATCAAACCCTAGATTTCCCTCTCAAGTCTGAGGATAATCATCTTCATCATCGTCTGATGATTCAACCCTTTCATCCAAATCTGATGCCAGTGACGATGATCACACCGAATGATTCAGTAGAGACAACACAGAATGATGCTGCTTCTGGTCATTATGATCTGATGATGAGAGAATCTTACTGTCCATCTTCTTCATGGTGTTACACTAATAATAATAACAACAACAATAATTGCTATCCTAATTATTTACAGAATAGTAATAATAATATTCTGCAGATTGATCCTCATGAAGCAAATTTGCAGGTGAATAATAATATTCCAGCAGCTCCTCTGATGATGCAAGAATTTCAGACCTATCATCACTATGGGTATAATCACCTCGATCTGCTTCAAGTTCATCATCAGAAATTCAACTATATGGACCAAAAGAAGTAA 1032 0.3973 MGRGRLAMKLIEKEKSRKATFQKRKNGIMKKAHELSTLCGVDCCLIVYSPNSINDLPEIWPQDRIQVRRIIEKYNAKIAEKSPKKYNVMEFFKDRKNRVEAEACKLRQERLRKLYPTWDFTFDKLGEEQLRMFVALLDSRIEDCKERINMLKKKCYIEEKQQQQIAESSSDKSSASASNRDHLSFIHNNSSTTTFSAHHHQTLDFPLKSEDNHLHHRLMIQPFHPNLMPVTMITPNDSVETTQNDAASGHYDLMMRESYCPSSSWCYTNNNNNNNNCYPNYLQNSNNNILQIDPHEANLQVNNNIPAAPLMMQEFQTYHHYGYNHLDLLQVHHQKFNYMDQKK 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g2886 343 CDD MADS 2 61 - -
Acco06g2886 343 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Acco06g2886 343 SUPERFAMILY SRF-like 2 87 IPR036879 GO:0003677|GO:0046983
Acco06g2886 343 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 178 - -
Acco06g2886 343 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Acco06g2886 343 Coils Coil 134 154 - -
Acco06g2886 343 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Acco06g2886 343 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Acco06g2886 343 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Acco06g2886 343 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g2886 Acco-ChrAcco06 34392660 34394468 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g2886 1 147 Type I MADS-box Gene Family AT5G55690 35.762 8.73e-25 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Acco06g2886 SRF-TF 2.7e-20 No_clan