Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g2871 ATGGTGTTTTCCACCAAAGAGACAAGCAATTGTAGGTTTGGTGTACTCATGATAAAGACTAAGGAAGATGGTGGTGACAAATCAAAATCTATTGTACCTTCCATACTTTTTGGTGCAGTCAAGGAGGGGAGGAGGGGTATTCATAGCGTACTAAGGATGATCAAGGCATTGGGGAGCAAAAAGACTCTAAGGAAAGAGAAATGCTTGTGGAACGTTGTGTGGCAAGGGGGAAAAAGAAAAGAACTTTTGAGGTTGCCCAATGAGATAATGAATGGGGAAGATGACAAAGTTGAAGATAAATCTCTGTTTAACTTTGTGGATGTTTTGGATGTGGACCTAGTCGAAAAGGATATGGTTGAGGGGGACTTATTCTCTTCGGTGCCTCTCGATATTGGAGAAGAGAGTCGTCTAGATGAGTTGACTGACGAGAGCCTCATATTGGGACCATTAAGTGGTACAGCTATGCAGAATCAGCTTGTGTGTAATGGGTGCCGGAGTGTTTTGCTTTACCCTAGGGGGGCCACTAATGTCTGTTGTGCATTGTGCAACACAATTACCTCTGTTCCTCCTCGTGGGATGGAAATGTCTCAACTTTATTGTGGAGGATGTAGGACATTGCTGATGTACACACGTGGAGCTACAAGTGTTAGATGTTCCTGCTGTCATACGGTGAACCTTGCACCAGGTGCAATAGCATCTAGCCACTTTGCCCATATACACTGTGGGAACTGTCGGACAACTCTGATGTATCCGTATGGAGCTCCATCAGTCAAATGTGCAGTTTGTCAGTATATCACAGATACCAGCAGGACCAATGGAAGGGTTCCCAATACCGCCCACGGACCAAATGGGACAACCAACTCTGGAACGATACCTTCTACTTCAACATCAATGCCCAATTCTCAAGGCCAAACGGTCGTGGTAGAAAATCCTATGTCTGTTGATGCAAGTGGGAAATTGGTGAGCAACGTTGTTGTTGGCGTAACAACTGAGAAGAAGTAA 1002 0.4481 MVFSTKETSNCRFGVLMIKTKEDGGDKSKSIVPSILFGAVKEGRRGIHSVLRMIKALGSKKTLRKEKCLWNVVWQGGKRKELLRLPNEIMNGEDDKVEDKSLFNFVDVLDVDLVEKDMVEGDLFSSVPLDIGEESRLDELTDESLILGPLSGTAMQNQLVCNGCRSVLLYPRGATNVCCALCNTITSVPPRGMEMSQLYCGGCRTLLMYTRGATSVRCSCCHTVNLAPGAIASSHFAHIHCGNCRTTLMYPYGAPSVKCAVCQYITDTSRTNGRVPNTAHGPNGTTNSGTIPSTSTSMPNSQGQTVVVENPMSVDASGKLVSNVVVGVTTEKK 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g2871 333 MobiDBLite consensus disorder prediction 273 302 - -
Acco06g2871 333 PANTHER PROTEIN LSD1 153 188 IPR040319 -
Acco06g2871 333 NCBIfam zinc finger domain, LSD1 subclass 238 266 IPR005735 -
Acco06g2871 333 NCBIfam zinc finger domain, LSD1 subclass 158 188 IPR005735 -
Acco06g2871 333 NCBIfam zinc finger domain, LSD1 subclass 197 226 IPR005735 -
Acco06g2871 333 Pfam LSD1 zinc finger 241 265 IPR005735 -
Acco06g2871 333 Pfam LSD1 zinc finger 161 185 IPR005735 -
Acco06g2871 333 Pfam LSD1 zinc finger 200 224 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g2871 Acco-ChrAcco06 33639524 33651087 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Acco06g2871 zf-LSD1 6.8e-11 No_clan