Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g2787 ATGTCTATAATCGAGGCCCAGACAGTCGATTGTGTTCATCAGCGCAGTGGAGGTGGTGCCGATCACCACCGTGCCCCCAGCAAACGTAAATTTGATGATTTCACGGCTTCCTTTAATGACGACGGGGAAAATTTGGGGGATTTTTGCGACTTAGTATCAGCAAGAATGAGGAAAGATGAACCTAAAGCCGAAAATTCTTGCAATTTTCAAACTTTTAATGGGTCTCCCCCAGATGTTGTTGGTACTAGGATACCAGGCACAGACTCGAATTCTTATTCGTCCCCGTCTGAGTCGTCTCGGGCATGGTCTAAGTTGCATTTTTTCATTCGATTGATGTCGGAAGGAAAAACTATGGTACTGGAAGCTTGTCCAAAAGATACAGTAAAATCGATTCATGAACGTATCCAAGCCATTACTGGAATTCCGCTCTTTGAACAAAGACTGATATATATGGGTAAACAGCTTCAGTTGGAACAGACTTTGGTCGATTGTGCGATTGAGAGAGATTGTCATCTTCAATTGGTTGGGCGCATGCGCAGCACAGAACATCCTCAAGCTTGGCAGGTAATAAATGATATGGTTTCATTAATTTGGCGTCTCTGCAGGGGTGAAGTGCGACATGATGCCTTGAAAATTATCAAAGGCCTCATGACTGAATATTTAAAAATGACTACTAGAATTGATATTGATGCAGCTTCTGGGTATTTCCAGATAATTTTGTCTTCATCTGCGCCTGTTGTGCTAGTTATGCTCTATATGTCACCCTATGTAGGTAACAAAGCATGTGCCGATTGTTCAATTAGGCATTTTATGAGTTCCTGTCGCAGTACCTTGTCTAAATCATTGCATACTAAGTGTGCGCGTGTAGTGCTAGAGTTTTGCAAATTACTTAGAAGGGCGGGGCCTGAGGATTCTTTGTATCGTTGTTGCCGAAGCACCTTTGGGTCATTATTGGAGTCTGCTAGCATTTCCTATGTTTGTGAGTGGGACAAGGAGTTGATTTTAATTGAAGATATTATCCCTTTTGTTTGGGAGATTACAAGTAGACTGTTGAGGGCTTTGGATCTGAGTATGGAATCCCCCACTAGTGTAGGACCATCATCAAGTGATGTTCAGGATTTTGCTGCATTCTTATTCCCTCTAAGGACTAGAATCAACAAGCCACAAGATTTAAAGAGTCTATATTCTCTGAAGCCTGACGAAAAACTAACTAATCTCCAGTTATTTGTGGAAGAAGATGATATTCATCGTATATTTAGGAAAATATTACAAAAAATGGATCAGTGCCTTGATAAAATGCAAGAAATTTTGGCTGCCAAGAAACGAGAGGAGGGAGATAATCTTTATTCAGCATGGTCTCAGTATCTTTCCATCTTGAAGGAATTGTATCACATTTCTAAGCTCTGTGAAAGAGCTGAAGAAGAATTTTGGGGGGTTTTAAGACGTCAGAAAAGTATGCTGGTTCTACTTATCATCCACCATGCAAAGAGAACTGATGACCATCAGTGGATTCTGGAGCACAAGGGCATAACGAATTTTGAATCTAGAAGGCATTTGGTGATGATGATGTTCCCAGATGTAAAAGAAGACTATGAGGAATTGCATGAGATGCTCATTGACCGGTCTCAGCTGTTGGCAGAATCATTTGAATACATAGCACGGGCAGAGCCTGATTCTCTACATGCTGGTCTGTTTATGGAATTCAAAAATGAGGAGGCTACAGGTCCAGGTGTACTGCGAGAGTGGTTTCTCTTGGTGTGCCAAGCTTTGTTTAATCCACAAAATGCTCTTTTTGTGACATGCCCGAATGACCAGAGGAGATTTCTCCCCAATCCTGCATCCAAGGTACATCCTCTGCACCTTGAATACTTCACCTTCTCTGGACGAGTTATCGCTTTAGCTTTAATGCATAGGGTGCAAGTGGGCATTGTCTTGGATCGTGTGTTTTTCATGCAACTGGCGGGAAAACATATTACTTTGGAAGATATACGGGATGCTGATCCATGTTTGTATCGTAGCTGCAAGCAAATCTTGGAGATGGATGCTGATTTCATTGATTCAGATGCTCTAGGACTGACCTTTGTTAGAGAGGTGGAGGAATTAGGATACAGGAAAGTGGTTGAGCTTTGCCCAGGTGGGAAAAGCCTTGTTGTTAATAGTGAGAGCAGGGAGAAGTATGTTGATCTTCTTATACAGGATCGTTTTGTAACATCTATATCTGAGCAGGTGTCACATTTTGCCCGTGGTTTTGCTGATATTCTTTGCAACTCAAGACTCCAACAATTCTTTTTTCAAAGTCTAGATCTTGAGGATCTTGATTGGATGCTGCATGGGAGTGAAAGTACCATTTCTGTTGAAGATTGGAAGGCACATACTGAGTACAATGGCTTTAAAGAGACAGATCCTCAAATATATTGGTTCTGGGAGATTGTTGGGAAAATGACAGCAGAGCAAAGGAAGGTTCTTTTGTTTTTTTGGACGTCTCTCAAGTATTTACCTGTGGAAGGTTTCAAAGGCTTGTCTTCTCGTCTCTACATTTACAACTCCATGGAACCCAACGATCACCTTCCTTCATCACACACATGTTTTTTCCGGCTGTGTTTCCCTCCATATCCATCTTTCGCCGTCATGCAAGATCGTATCCGAATCATCACACAGGAGCACATTGGCTGCAGCTTTGGTACTTGGTGA 2691 0.4195 MSIIEAQTVDCVHQRSGGGADHHRAPSKRKFDDFTASFNDDGENLGDFCDLVSARMRKDEPKAENSCNFQTFNGSPPDVVGTRIPGTDSNSYSSPSESSRAWSKLHFFIRLMSEGKTMVLEACPKDTVKSIHERIQAITGIPLFEQRLIYMGKQLQLEQTLVDCAIERDCHLQLVGRMRSTEHPQAWQVINDMVSLIWRLCRGEVRHDALKIIKGLMTEYLKMTTRIDIDAASGYFQIILSSSAPVVLVMLYMSPYVGNKACADCSIRHFMSSCRSTLSKSLHTKCARVVLEFCKLLRRAGPEDSLYRCCRSTFGSLLESASISYVCEWDKELILIEDIIPFVWEITSRLLRALDLSMESPTSVGPSSSDVQDFAAFLFPLRTRINKPQDLKSLYSLKPDEKLTNLQLFVEEDDIHRIFRKILQKMDQCLDKMQEILAAKKREEGDNLYSAWSQYLSILKELYHISKLCERAEEEFWGVLRRQKSMLVLLIIHHAKRTDDHQWILEHKGITNFESRRHLVMMMFPDVKEDYEELHEMLIDRSQLLAESFEYIARAEPDSLHAGLFMEFKNEEATGPGVLREWFLLVCQALFNPQNALFVTCPNDQRRFLPNPASKVHPLHLEYFTFSGRVIALALMHRVQVGIVLDRVFFMQLAGKHITLEDIRDADPCLYRSCKQILEMDADFIDSDALGLTFVREVEELGYRKVVELCPGGKSLVVNSESREKYVDLLIQDRFVTSISEQVSHFARGFADILCNSRLQQFFFQSLDLEDLDWMLHGSESTISVEDWKAHTEYNGFKETDPQIYWFWEIVGKMTAEQRKVLLFFWTSLKYLPVEGFKGLSSRLYIYNSMEPNDHLPSSHTCFFRLCFPPYPSFAVMQDRIRIITQEHIGCSFGTW 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g2787 896 SUPERFAMILY Hect, E3 ligase catalytic domain 531 882 IPR035983 GO:0004842
Acco06g2787 896 Gene3D - 99 193 - -
Acco06g2787 896 Gene3D Hect, E3 ligase catalytic domains 536 765 - -
Acco06g2787 896 ProSiteProfiles HECT domain profile. 556 896 IPR000569 GO:0004842
Acco06g2787 896 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 656 738 - -
Acco06g2787 896 ProSiteProfiles Ubiquitin domain profile. 105 181 IPR000626 GO:0005515
Acco06g2787 896 FunFam E3 ubiquitin-protein ligase UPL5 780 895 - -
Acco06g2787 896 Gene3D Hect, E3 ligase catalytic domain 780 895 - -
Acco06g2787 896 Coils Coil 423 443 - -
Acco06g2787 896 SUPERFAMILY Ubiquitin-like 107 193 IPR029071 -
Acco06g2787 896 CDD HECTc 535 894 IPR000569 GO:0004842
Acco06g2787 896 Gene3D Hect, E3 ligase catalytic domain 656 738 - -
Acco06g2787 896 SMART ubq_7 107 177 IPR000626 GO:0005515
Acco06g2787 896 Pfam Ubiquitin family 108 179 IPR000626 GO:0005515
Acco06g2787 896 PRINTS Ubiquitin signature 137 157 IPR019956 -
Acco06g2787 896 PRINTS Ubiquitin signature 116 136 IPR019956 -
Acco06g2787 896 PRINTS Ubiquitin signature 158 179 IPR019956 -
Acco06g2787 896 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 106 894 - -
Acco06g2787 896 Pfam HECT-domain (ubiquitin-transferase) 585 888 IPR000569 GO:0004842
Acco06g2787 896 SMART hect_3 554 894 IPR000569 GO:0004842
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g2787 105 179 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 40.000 7.47e-11 59.7