Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g2728 ATGGAACTTTCTAGTGAAGAAGGAGAGATCCCAATCCCAATAAACAATGCCACTAGTTATGGAGGAGGTGGTAATAATGGCCATGGCCACTTGATCCACCACCATCATCATGAGCCAGCAATCCACAGCCACATGATCTCTAATTCCTCAGTACTACCAGTAGCATCAGTGGCAGCCCACAACGTCGAAGGAGGCGGTGGCGGTGGTGACGGCATGGAGGAGGATGATGATCAGCAGCATGGGCCCTGCAGCAAGAAACTAGCGGTGAAGTACAGAGAATGCTTGAAGAACCATGCAGCTTCCATGGGAGGAAATGCCACAGATGGTTGTGGTGAGTTCATGCCCAGTGGAGAAGAAGGAACACTTGAAGCCCTCACTTGTTCAGCCTGCCATTGCCACAGAAACTTCCATAGAAAAGAAATTGAAGGCCAAGGCCTTAATGATCAACATCAAGAAGATCATTATCTTCTTCATCATCATCATCAATATCTTCATCATCTTCATAACACTAATAATCATCCTTACAGGTTAGGTGGTAGGAAGCTCCTTCTTCCTCCTCCTCCGCCTGAAACCCTTGGCTACCCTACACCACCACCACCACCACCAGGTAACATCTTACCTTCTAGAATGATCATGCCCTACAATGTCATTGGGTCCCACCACCCATCCCTCCCTTCAGACTTATCTGATGAGCAAGATGATCCTCATCATCATTATGGCATAGTGAGGCAACATCATCATCAGAATAAGAAGAGGTTCAGGACAAAGTTCACACAGGAGCAGAAGGAGAAGATGCTGAGTTTTGCTGAGAGAGTTGGATGGAAGATTCAGAAGCAAGAAGAGTCTGTGGTTCAACAGTTTTGTCAAGAGATTGGTGTGAAGAGAAGAGTTCTTAAGGTTTGGATGCACAACAATAAGCACAACCTTGCCAAAAAGATGAATCCCGCAGCAGCAACTACTCCTCCTCCTACTGCTGCTACTGCTTCACCACCTTAA 996 0.4659 MELSSEEGEIPIPINNATSYGGGGNNGHGHLIHHHHHEPAIHSHMISNSSVLPVASVAAHNVEGGGGGGDGMEEDDDQQHGPCSKKLAVKYRECLKNHAASMGGNATDGCGEFMPSGEEGTLEALTCSACHCHRNFHRKEIEGQGLNDQHQEDHYLLHHHHQYLHHLHNTNNHPYRLGGRKLLLPPPPPETLGYPTPPPPPPGNILPSRMIMPYNVIGSHHPSLPSDLSDEQDDPHHHYGIVRQHHHQNKKRFRTKFTQEQKEKMLSFAERVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKMNPAAATTPPPTAATASPP 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g2728 331 Gene3D - 240 312 - -
Acco06g2728 331 SUPERFAMILY Homeodomain-like 243 311 IPR009057 -
Acco06g2728 331 NCBIfam homeobox domain, ZF-HD class 250 306 IPR006455 -
Acco06g2728 331 MobiDBLite consensus disorder prediction 60 82 - -
Acco06g2728 331 MobiDBLite consensus disorder prediction 1 33 - -
Acco06g2728 331 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 91 140 IPR006456 -
Acco06g2728 331 FunFam Zinc-finger homeodomain protein 2 239 311 - -
Acco06g2728 331 Pfam ZF-HD protein dimerisation region 89 141 IPR006456 -
Acco06g2728 331 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 90 141 IPR006456 -
Acco06g2728 331 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 78 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g2728 Acco-ChrAcco06 28926364 28927359 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g2728 1 317 ZF-HD Transcription Factor Family AT2G02540 45.970 2.18e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Acco06g2728 ZF-HD_dimer 5.2e-29 No_clan