Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g2649 ATGCCAACAAAATTCGCTAAAACACATTTGGAGAAAGAGTGTGGTGTTGTGCAACTTGAGGCACGAGATGGGAGAACTTGGCCTGTCAAGTATAAGATTCCCACAATCAAAGATGGGTGGGAGAAGTTTGTAATGGAAAATGGTTTGAAAGTGGGTCAAGTTTGTATTTTTGAAATGATTGGCCGTGTGTTCAAAGTACATATTTTCGGAGACCAAGAGGAAGTTAAAAGCAGAAAGAGGATTTACAATCTTGCAAAAGATTTGGAAGTTAAAAAGGAGCCGATCTGCAATATGCAACAGACTCCTCTTGAGAAGGCCAGCTCTTTCAAATATGAGAATCCTTATTTTATGGTTAACATGACAAATGCTTACATTTGTGGCAGGTCAAACTTGCATGTGCCAGCACATTTTGCAAGAAAACATCTTCATGACTGTACGGAGAGTATCGAACTTGTTGTACAAGCTATAGTTTGGCCTGTTGAGTATGTAGTTAGAATACTTCCTTCAGGAATTGAAGCTCATGAATTTTCTCTTGGTGGATGGAGGCAATTTGGCAAGGACAACGACTTGAAAGTAGGTGATATCTGTGTCTTTGAGCTCAACCCCGACATCAAACTTACATTTCAAGTAACAATTTTACGAGCCACTAAAACACCTAGTTCATCCTACAAACTCAGGTCAACCTTAAAGGATGGAAAAATAAACTCAGATCCCCCTTGGTGA 723 0.3956 MPTKFAKTHLEKECGVVQLEARDGRTWPVKYKIPTIKDGWEKFVMENGLKVGQVCIFEMIGRVFKVHIFGDQEEVKSRKRIYNLAKDLEVKKEPICNMQQTPLEKASSFKYENPYFMVNMTNAYICGRSNLHVPAHFARKHLHDCTESIELVVQAIVWPVEYVVRILPSGIEAHEFSLGGWRQFGKDNDLKVGDICVFELNPDIKLTFQVTILRATKTPSSSYKLRSTLKDGKINSDPPW 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g2649 240 CDD B3_DNA 1 69 IPR003340 GO:0003677
Acco06g2649 240 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 101 220 IPR044837 -
Acco06g2649 240 Gene3D - 1 73 IPR015300 -
Acco06g2649 240 Gene3D - 96 217 IPR015300 -
Acco06g2649 240 ProSiteProfiles B3 DNA-binding domain profile. 1 72 IPR003340 GO:0003677
Acco06g2649 240 CDD B3_DNA 114 214 IPR003340 GO:0003677
Acco06g2649 240 ProSiteProfiles B3 DNA-binding domain profile. 116 216 IPR003340 GO:0003677
Acco06g2649 240 SMART B3_2 116 216 IPR003340 GO:0003677
Acco06g2649 240 SMART B3_2 1 72 IPR003340 GO:0003677
Acco06g2649 240 SUPERFAMILY DNA-binding pseudobarrel domain 109 215 IPR015300 -
Acco06g2649 240 SUPERFAMILY DNA-binding pseudobarrel domain 2 70 IPR015300 -
Acco06g2649 240 Pfam B3 DNA binding domain 116 215 IPR003340 GO:0003677
Acco06g2649 240 Pfam B3 DNA binding domain 2 69 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g2649 Acco-ChrAcco06 26283541 26296155 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g2649 1 60 REM Transcription Factor Family AT1G49480 34.375 5.40e-06 44.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Acco06g2649 B3 7.6e-12 CL0405