Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g2648 ATGGCTTGTAATTCCCAGGACCCGTACAGTCCCATCCACTTCTTCATAGTTATCTCCAAAACCAATCTTGATGCCATTATGATTCCAAGCAAATTTACAGTGAGATATGGAAGATGTTTGTCGAACCCAGTGTGTCTGAAGTCTCCTGATGGTAAAGAATGGAAAGTGTATTGGGCAAAACGTGATAATGATTTTTGGTTTCAAAAGGGATGGAAAGAATTTACTAACTTTTACTGTCTAGATGTTGGTTATCTGGTTCTGTTCAAATATGAAGGAACTTCTCAGCTTGGTGTACACATAATTGACAAGAGTGCCCTAGAAATAGAATATCCTTTTTCCATGCACGCCTCTAGTCAAGAGGACAACCTTGATAATCTCAATGACGATACAGTTGTAATCTTGGACAAGACGCCTTCAAGCCCTGAGGACAATCCTGATAATCTCAGTGATGATCCAATTGAAATCTCGGATGAGGTGCCTCAAAGCCCTAAGGCTAGTGACAATATGCCCACGTCATCTTCTAGGCCTCATAAGAAAATGAGAAGTACTACAGATGAAGATGTTGAAATAAGAAGCTTCAATCTGCAGAATATGCCTGTGGGCATGAAAACCAAAGACAGGCAACTTCAAGGAACAAAACTGAAGACAGAAAATACGCCCTTGTCATCTTCTAGGCCTCTTAAGAAAATGAGAAGTACTGCAGATGAAGATGTTGAAACGAGAAGCTTCAATCTGCAGAATATGCCGGTGGTCATGAAAGCTGAAGACAGGCAATTTCAGTCAACGAAACTTCAGAAATCAGCCAATGCAGACTTGAAATTTTCTCAGCAGAAATCTGAAGGAGACACAGGAAAAAGAATTTTTGAAAAGAATAAATATCTGAATTCTGAGAATGGAATGAAGAAAGTATTAACTGCTGTGGAAAAGGACATTGCTTTGGAGAGTGCCAGTTCTTTGGATACTGATAAGCCCTATTTCACTATGGTCATGCAACGTTCATATGTCGGTCCTAAGTCTTGTTTGCCAATTCCAAGAGAATTTGTTAAAAACCATTTGGGGGAAGACTGTGAAGTTTTCAAACTTCAGGCCTTGGATGGGAGAATTTGGCATGCTCAGTATAGGTTTTCCAAGATTGGAAAAGGCTGGAGGAATTTTGTGAACGAAAGTGGGTTGAAGGAGGGACATGTCTGTGCATTTGAAATGATTGGTCCCTCATTATTCAAAGTACATATTTTAAGAGGGGCTGAAAAAGGAAATCTGAAAGTTAACTCTGTTGAAGCGAAAAAGAAAGTTGACTCCTTTGAAAAGAAGCAGAGCAGCAGGATGCAAGATCCACCTCTTGAAAAGGCTACCTCTTCCAAATCTGAAAATCGTCAGTTTACAGTAATGATGACTCACGCTCACATTCATGGCACATCATACCTGCATGTGCCAATTGAATATGCAAAAGCACATCTTCGTAATAATGCTACTAAGAGTGTCACACTTATTGTACAAGATAAAGATTGGACTGTTGGGTACGCATTCAGAAGTTATAATAAACAACAACAAAGTGCTGAATTTTCTTGGGGATGGAAGCAATTCTGTAAGGATAATGACTTGAAAGTAGGGGACGTTTAACCTTACACATATACTGTGAAATTGATATACGCATGCCTTGGATATGAATTGCATCTTGATGCACTTGGTTACTGTGGACTTGATGTGGGAGGGATGATGTGA 1722 0.3961 MACNSQDPYSPIHFFIVISKTNLDAIMIPSKFTVRYGRCLSNPVCLKSPDGKEWKVYWAKRDNDFWFQKGWKEFTNFYCLDVGYLVLFKYEGTSQLGVHIIDKSALEIEYPFSMHASSQEDNLDNLNDDTVVILDKTPSSPEDNPDNLSDDPIEISDEVPQSPKASDNMPTSSSRPHKKMRSTTDEDVEIRSFNLQNMPVGMKTKDRQLQGTKLKTENTPLSSSRPLKKMRSTADEDVETRSFNLQNMPVVMKAEDRQFQSTKLQKSANADLKFSQQKSEGDTGKRIFEKNKYLNSENGMKKVLTAVEKDIALESASSLDTDKPYFTMVMQRSYVGPKSCLPIPREFVKNHLGEDCEVFKLQALDGRIWHAQYRFSKIGKGWRNFVNESGLKEGHVCAFEMIGPSLFKVHILRGAEKGNLKVNSVEAKKKVDSFEKKQSSRMQDPPLEKATSSKSENRQFTVMMTHAHIHGTSYLHVPIEYAKAHLRNNATKSVTLIVQDKDWTVGYAFRSYNKQQQSAEFSWGWKQFCKDNDLKVGDVXPYTYTVKLIYACLGYELHLDALGYCGLDVGGMM 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g2648 573 CDD B3_DNA 13 102 IPR003340 GO:0003677
Acco06g2648 573 ProSiteProfiles B3 DNA-binding domain profile. 11 104 IPR003340 GO:0003677
Acco06g2648 573 Pfam B3 DNA binding domain 19 103 IPR003340 GO:0003677
Acco06g2648 573 Pfam B3 DNA binding domain 326 413 IPR003340 GO:0003677
Acco06g2648 573 Pfam B3 DNA binding domain 460 539 IPR003340 GO:0003677
Acco06g2648 573 SUPERFAMILY DNA-binding pseudobarrel domain 10 104 IPR015300 -
Acco06g2648 573 CDD B3_DNA 460 539 IPR003340 GO:0003677
Acco06g2648 573 SUPERFAMILY DNA-binding pseudobarrel domain 319 413 IPR015300 -
Acco06g2648 573 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 438 539 IPR044837 -
Acco06g2648 573 CDD B3_DNA 324 413 IPR003340 GO:0003677
Acco06g2648 573 SUPERFAMILY DNA-binding pseudobarrel domain 455 539 IPR015300 -
Acco06g2648 573 SMART B3_2 14 104 IPR003340 GO:0003677
Acco06g2648 573 SMART B3_2 326 415 IPR003340 GO:0003677
Acco06g2648 573 SMART B3_2 460 552 IPR003340 GO:0003677
Acco06g2648 573 MobiDBLite consensus disorder prediction 433 455 - -
Acco06g2648 573 MobiDBLite consensus disorder prediction 161 177 - -
Acco06g2648 573 MobiDBLite consensus disorder prediction 119 226 - -
Acco06g2648 573 Gene3D - 303 416 IPR015300 -
Acco06g2648 573 Gene3D - 439 547 IPR015300 -
Acco06g2648 573 ProSiteProfiles B3 DNA-binding domain profile. 326 415 IPR003340 GO:0003677
Acco06g2648 573 Gene3D - 7 105 IPR015300 -
Acco06g2648 573 ProSiteProfiles B3 DNA-binding domain profile. 460 556 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g2648 Acco-ChrAcco06 26250047 26255755 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g2648 290 402 B3 DNA Binding Superfamily AT3G18990 27.350 3.86e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Acco06g2648 B3 2.4e-13 CL0405