Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g2611 ATGTCATTCCGGAGTATAGTTCATGATTTGAGAGATAGCTTAGGGAGCTTATCTAGACGGGGTTTTGATGTGCGGCTGACTGGTCATCACAGAGGAAAATCTCATGGTGCTATACATAATCGGCCAGAAGTAATTGAAGAGAGTTGTTGGGCTAGCTTGCCCCCAGAATTGTTGTATGATATCATTAGAAGGCTAGAAGAGAGTGAAAGTACATGGCCTGCTCGAAAGCATGTTGTTGCATGTGCTGCAGTATGCCGGTCTTGGAGGACAATGTGCAAAGAAATCGTTAAGAGTCCTGAGTTTAGTGGCAAGCTTACTTTCCCTGTGTCCTTGAAGCAGCCAGGGCTGCGAGACGGAACCATTCAGTGTTTCATCAAAAGGGATAAATCTAACTTATCATATTGCCTTTTCCTTTCTCTCAGCCCTACTTTGTTAGTTGAAAATGGAAAATTCCTCCTTTCTGCTAAGAGGACAAGAAGAACAACTTACACAGAGTATGTTATTTCCATGGATGCCGACAATATCTCTCGATCGAGTAGCTCTTACATTGGAAAGCTGAGATCAAACTTACTGGGTACCAAATATGTAATATACGATACACAGCCTCCCTACAATTCTGCTCATATACCACCGCGGCCGGGGAGGACAAGCCGAAGGTTTTATTCGAAAAAGGTATCACCAAAGGTCCCATCTGGGAGTTATAGCATAGCTCAAGTAACATATGAATTAAATGTTCTTGGGACACGAGGCCCAAGAAAGATGCACTGCATTATGCATTCAATACCGGCATCGGCACTTGATGCTGGTGGCATGGTCCCTGGCCAACCTGAGCTTCTTCCTCACTCCCTGGGGGACTTATTCTGGAGCATGTCCTTTTCAGAATCCTTAGACCGCTCTGTTCAGTTCAGCAGCTCCAGATTTTCAGAGTTGAGGGAAGGCGGCAATGAGGAGGGTGAGGACGGCAAGGTGGGGCCCTTGGTTCTGAAAAACAAACCTCCAAGATGGCATGAACAATTGCAGTGTTGGTGCCTTAACTTCTGCGGCCGTGTAACCATTGCATCGGTTAAGAACTTTCAGTTGATTGCTGCTACCCAGGCAGCTGCAGCCGATGCTCCTGCACCGTCTCAGTCAGCGCTGCCGCCTGAGCAAGATAAGATAATCTTGCAGTTTGGTAAAGTGGGGAAAGATATGTTCACCATGGATTACCGATATCCTCTATCGGCCTTCCAGGCTTTTGCGATATGCTTGAGCAGCTTCGATACCAAATTGGCCTGTGAATAA 1281 0.4629 MSFRSIVHDLRDSLGSLSRRGFDVRLTGHHRGKSHGAIHNRPEVIEESCWASLPPELLYDIIRRLEESESTWPARKHVVACAAVCRSWRTMCKEIVKSPEFSGKLTFPVSLKQPGLRDGTIQCFIKRDKSNLSYCLFLSLSPTLLVENGKFLLSAKRTRRTTYTEYVISMDADNISRSSSSYIGKLRSNLLGTKYVIYDTQPPYNSAHIPPRPGRTSRRFYSKKVSPKVPSGSYSIAQVTYELNVLGTRGPRKMHCIMHSIPASALDAGGMVPGQPELLPHSLGDLFWSMSFSESLDRSVQFSSSRFSELREGGNEEGEDGKVGPLVLKNKPPRWHEQLQCWCLNFCGRVTIASVKNFQLIAATQAAAADAPAPSQSALPPEQDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g2611 426 CDD F-box_AtTLP-like 50 94 - -
Acco06g2611 426 SUPERFAMILY Tubby C-terminal domain-like 99 426 IPR025659 -
Acco06g2611 426 Gene3D Tubby Protein; Chain A 109 420 IPR025659 -
Acco06g2611 426 PANTHER TUBBY-RELATED 44 424 - -
Acco06g2611 426 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Acco06g2611 426 PRINTS Tubby superfamily signature 182 206 IPR000007 -
Acco06g2611 426 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Acco06g2611 426 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Acco06g2611 426 PRINTS Tubby superfamily signature 404 426 IPR000007 -
Acco06g2611 426 PRINTS Tubby superfamily signature 383 402 IPR000007 -
Acco06g2611 426 PRINTS Tubby superfamily signature 166 182 IPR000007 -
Acco06g2611 426 FunFam Tubby-like F-box protein 45 98 - -
Acco06g2611 426 Pfam Tub family 111 421 IPR000007 -
Acco06g2611 426 Pfam F-box domain 50 97 IPR001810 GO:0005515
Acco06g2611 426 ProSitePatterns Tub family signature 2. 411 426 IPR018066 -
Acco06g2611 426 SUPERFAMILY F-box domain 41 93 IPR036047 GO:0005515
Acco06g2611 426 Gene3D - 43 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g2611 Acco-ChrAcco06 24803988 24805998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g2611 1 426 TUB Transcription Factor Family AT1G76900 66.813 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Acco06g2611 Tub 3.9e-113 CL0395