Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g2550 ATGAAGCAGGAAGTGGTCGATGCAAATTCAAATTCAAATGGATTGGTTCTTCCTCATCAATTTCCTACTTCTGGTGGAGACAACAACAATTATGCTTCCATCTTCAACAACACCACAACTTCACCAGCAACAAAAATGGTGACATCCTCCCATCATCATTTTGACTATAAGAGGAAAGTTTCCCACAATGACCGCTCTTTGGCCAGTATCGGCACCGTGAGGAGCTTACGCCCTCGCCGGCCGTCGTCGCCAAACTGTGACCGGCGAATCTGCACAAATTACAAATGCAGGACAAGGAACACTCCCATGTGGCGTAGGGGACCTCTAGGTCCAAAGACTCTCTGCAATGCATGTGGAATTCAGTATAAGAAGCAAGTGTCAAGCAGAGGAAGCGACCTGGTGTGA 405 0.4741 MKQEVVDANSNSNGLVLPHQFPTSGGDNNNYASIFNNTTTSPATKMVTSSHHHFDYKRKVSHNDRSLASIGTVRSLRPRRPSSPNCDRRICTNYKCRTRNTPMWRRGPLGPKTLCNACGIQYKKQVSSRGSDLV 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g2550 134 Gene3D - 87 133 IPR013088 GO:0006355|GO:0008270
Acco06g2550 134 SMART GATA_3 85 133 IPR000679 GO:0006355|GO:0043565
Acco06g2550 134 PANTHER OS01G0976800 PROTEIN 55 126 - -
Acco06g2550 134 CDD ZnF_GATA 90 133 IPR000679 GO:0006355|GO:0043565
Acco06g2550 134 Pfam GATA zinc finger 95 125 IPR000679 GO:0006355|GO:0043565
Acco06g2550 134 ProSiteProfiles GATA-type zinc finger domain profile. 96 129 IPR000679 GO:0006355|GO:0043565
Acco06g2550 134 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 89 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g2550 Acco-ChrAcco06 23378129 23379100 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g2550 91 125 C2C2-Gata Transcription Factor Family AT3G20750 71.429 7.61e-15 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Acco06g2550 GATA 6e-15 CL0167