Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g2492 ATGGGGCAGATGAAGAGAGATTCCCTTGACCGGATCATTACTCAACTGTTAGAAATGTCGGAAGTGGATGAGTACCGTTGCTTTATTGGTGGCCTTGCATGGTCAACATCTGATAGAAAGCTGAGGGATGCGTTTGAAAAGTATGGCAAACTCATTGAGGCAAAGGTGGTGGTTGACAAATTCTCTGGGCGCTCTCGTGGTTTTGGATTTGTCACATTTGATGAAAAGAAAGCAATGGAAGAGGCTATTAAGTCTATGAATGGGATGGATTTAGATGGTCGAACTATCACTGTTGATAAAGCTCAGCCTCAACAAGGATCTACTAGAGATGATGGTGATCGTTACCGTGATAGGGGTCGTGATCGTAATCGAGATTATGGAGGTGGTCGAAGCTCCAATGGTGGTGAATGTTTTAAATGTGGTAAACCTGGTCATTTTGCCAGAGAATGCCCTAGTGAAGGAGCAGGAGGGGGAAAGTATAGTGGCAGGGAAAGTAGATATGGTGGCAGGAGTGGCGGTAGTGGTCACTATGGTCCTGATAGGAATGCAGATCGCTATTCTGGTGGGCGTAACCGGGACTCAGGTAGTCATGGAGATTCTGGAAGTGACCGGAGGTGCTCGTTAATCTTCATTGAGCTGCAAAACTGGATGTGTTGCTATTGCTGCCTCAACTTCCTTTATGATGGCCTTGTTCTGGGATTCTTGTTTGGGGATCAATGA 720 0.4597 MGQMKRDSLDRIITQLLEMSEVDEYRCFIGGLAWSTSDRKLRDAFEKYGKLIEAKVVVDKFSGRSRGFGFVTFDEKKAMEEAIKSMNGMDLDGRTITVDKAQPQQGSTRDDGDRYRDRGRDRNRDYGGGRSSNGGECFKCGKPGHFARECPSEGAGGGKYSGRESRYGGRSGGSGHYGPDRNADRYSGGRNRDSGSHGDSGSDRRCSLIFIELQNWMCCYCCLNFLYDGLVLGFLFGDQ 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g2492 239 SUPERFAMILY Retrovirus zinc finger-like domains 129 153 IPR036875 GO:0003676|GO:0008270
Acco06g2492 239 SUPERFAMILY RNA-binding domain, RBD 19 135 IPR035979 GO:0003676
Acco06g2492 239 MobiDBLite consensus disorder prediction 183 200 - -
Acco06g2492 239 Gene3D - 10 132 IPR012677 -
Acco06g2492 239 MobiDBLite consensus disorder prediction 106 127 - -
Acco06g2492 239 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Acco06g2492 239 SMART rrm1_1 26 99 IPR000504 GO:0003723
Acco06g2492 239 MobiDBLite consensus disorder prediction 152 202 - -
Acco06g2492 239 FunFam Glycine-rich RNA-binding protein RZ1A 19 136 - -
Acco06g2492 239 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 19 204 - -
Acco06g2492 239 MobiDBLite consensus disorder prediction 93 130 - -
Acco06g2492 239 ProSiteProfiles Zinc finger CCHC-type profile. 137 152 IPR001878 GO:0003676|GO:0008270
Acco06g2492 239 CDD RRM2_NsCP33_like 26 101 - -
Acco06g2492 239 Gene3D - 133 192 - -
Acco06g2492 239 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Acco06g2492 239 Pfam Zinc knuckle 136 152 IPR001878 GO:0003676|GO:0008270
Acco06g2492 239 SMART c2hcfinal6 136 152 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g2492 Acco-ChrAcco06 22182428 22186532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g2492 11 84 C2H2 Transcription Factor Family AT2G19380 40.789 2.43e-12 64.3