Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g2481 ATGAGACATATGGACAGAGTGATTTCGTCTTTCATGTGTGCTTTACTTCTTTGCGTAATCTTAGTGTTTAATTTGGTGCTGAATGTTTCTGGTAACGCCGAAGGTGATGCCCTGAATGCATTTAAGACCAGCGTAGCTGATCCAAACAATGTTCTTCAAAGCTGGGATGCTACCCTTGTCAATCCTTGCACATGGTTTCATGTTACATGCAATAGTGATAATAGCGTGACCCGTGTTGATCTTGGAGATGCCAACCTATCGGGTCAACTAGTTTCACAGCTTGGTCTACTCCAAAATTTGCAGTACTTGGAGCTTTATAGCAATAAGATAACTGGAAAAATCCCAGACGAATTTGGAAATTTGACAAATTTGGTGAGCTTGGATTTGTACACCAATAACTTATCTGGTAGCATACCCAACACATTTGGCAAGCTTCAAAAACTACGTTTCCTGCGTCTCAACAATAACACCTTGAGTGGAGCCATTCCCATGGCCTTGACTACTGTGAATTCACTGCAAGTCCTTGATCTTTCAGCAAACAAGCTACGAGGAGACATCCCAACCAGTGGTTCATTTCAATCATTTACTGAACTCAGTTTTAAGGATAATCCTGGTTTGAAACCACTAAACATTACACCTCGAACAATTTCACCAACCCCGCCGCCTTCTTCAGGCAGTAGTACTACTGGAGCTATTGCTGGAGGAGTTGCTGCTGCTGCTGCTCTAATGTTTGCAGCCCCTGCAATTGCACTTGCGTATTGCCGGAAGAGAAAACCACAAGATTATTTCTTTGATGTTCCTGCTGAGGAGGACCCTGAAGTTCACCTTGGTCAGCTTAAAAAGTTTCCCCTGCGTGAGCTGCAAGTTGCAACGGATGGCTTTAGTAACAAAAACATTCTGGGCAGAGGTGGATTTGGTAAGGTTTACAAGGGACGGTTAACTGATGGGTCTCTAGTTGCAGTGAAAAGACTTAAAGAGGAACGCACTCAAGGTGGGGAGCTGCAATTTCAAACAGAAGTAGAAATGATCAGCTTAGCCGTCCACCGTAATTTGCTGCGTCTGCGTGGTTTTTGCATGACACCGACTGAACGGTTGCTTGTGTATCCTTACATGGCTAACGGTAGTGTCGCATCATGTTTACGAGACCGCACGGAGTCAAAAGCCCCACTTGAATGGCCTATACGGAAGCGAATCGCGCTGGGAGCTGCAAAGGGGCTTGCTTATTTGCATGATCATTGTGATCCGAAGATCATTCACCGTGATGTTAAAGCTGCCAATATATTATTGGATGAGGAATATGAAGCAGTTGTTGGGGACTTTGGGTTGGCAAAACTCATGAATTACAAAGATACTCATGTTACCACAGCCGTACGCGGTACAATTGGGCACATTGCACCAGAATACCTCTCCACTGGAAAATCTTCAGAGAAGACTGATGTTTTTGGTTATGGTGTGATGCTTCTTGAACTAATAACTGGACAGAGGGCTTTCGATCTCGCACGACTTGCCAACGATGATGATGTCATGTTACTTGATTGGGTGAAAGGGCTTTTGAAAGACAAGAAATTGGAAACACTGGTGGATGCTGATTTGGCGGGTGTCTATAATGAAGAGGAGGTAGAACAACTAATCCAAGTGGCCTTGCTCTGCACACAAAGCTCGGCTATGGAAAGACCAAAGATGTCTGAGGTGGTAAGGATGCTTGAAGGTGATGGTTTGGCTGAAAAATGGGATCAATGGCAGAAAGACGAGATGCATCGGCGAGATAATCAAACCCTTCTCTCTAATCCTAATTGGCCGATTGCGGATTCAGCTTCACATATCCCCCCAGATGAATTGTCAGGTCCCAGATGA 1854 0.4455 MRHMDRVISSFMCALLLCVILVFNLVLNVSGNAEGDALNAFKTSVADPNNVLQSWDATLVNPCTWFHVTCNSDNSVTRVDLGDANLSGQLVSQLGLLQNLQYLELYSNKITGKIPDEFGNLTNLVSLDLYTNNLSGSIPNTFGKLQKLRFLRLNNNTLSGAIPMALTTVNSLQVLDLSANKLRGDIPTSGSFQSFTELSFKDNPGLKPLNITPRTISPTPPPSSGSSTTGAIAGGVAAAAALMFAAPAIALAYCRKRKPQDYFFDVPAEEDPEVHLGQLKKFPLRELQVATDGFSNKNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISLAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRDRTESKAPLEWPIRKRIALGAAKGLAYLHDHCDPKIIHRDVKAANILLDEEYEAVVGDFGLAKLMNYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKKLETLVDADLAGVYNEEEVEQLIQVALLCTQSSAMERPKMSEVVRMLEGDGLAEKWDQWQKDEMHRRDNQTLLSNPNWPIADSASHIPPDELSGPR 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g2481 617 FunFam Somatic embryogenesis receptor kinase 1 263 370 - -
Acco06g2481 617 Pfam Leucine Rich Repeat 99 121 IPR001611 GO:0005515
Acco06g2481 617 FunFam Somatic embryogenesis receptor kinase 1 30 220 - -
Acco06g2481 617 MobiDBLite consensus disorder prediction 209 228 - -
Acco06g2481 617 FunFam Somatic embryogenesis receptor-like kinase 1 371 588 - -
Acco06g2481 617 SUPERFAMILY Protein kinase-like (PK-like) 274 569 IPR011009 -
Acco06g2481 617 SUPERFAMILY L domain-like 34 222 - -
Acco06g2481 617 Gene3D Transferase(Phosphotransferase) domain 1 371 588 - -
Acco06g2481 617 ProSiteProfiles Protein kinase domain profile. 294 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco06g2481 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 417 429 IPR008271 GO:0004672|GO:0006468
Acco06g2481 617 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 15 578 - -
Acco06g2481 617 MobiDBLite consensus disorder prediction 588 617 - -
Acco06g2481 617 Gene3D Ribonuclease Inhibitor 31 213 IPR032675 -
Acco06g2481 617 Pfam Leucine rich repeat 123 182 IPR001611 GO:0005515
Acco06g2481 617 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Acco06g2481 617 SMART LRR_typ_2 121 144 IPR003591 -
Acco06g2481 617 SMART LRR_typ_2 169 194 IPR003591 -
Acco06g2481 617 SMART LRR_typ_2 145 168 IPR003591 -
Acco06g2481 617 SMART LRR_typ_2 97 120 IPR003591 -
Acco06g2481 617 Gene3D Phosphorylase Kinase; domain 1 263 370 - -
Acco06g2481 617 ProSitePatterns Protein kinases ATP-binding region signature. 300 322 IPR017441 GO:0005524
Acco06g2481 617 Pfam Protein kinase domain 295 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco06g2481 617 SMART serkin_6 294 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g2481 Acco-ChrAcco06 21942073 21948344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g2481 11 617 Receptor kinase-like Gene Family AT4G33430 73.252 0.0 912
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Acco06g2481 Pkinase 3e-45 CL0016