Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g2343 ATGTCACCTAAACTGCAGGAAATAATGGAAAATCCTACCTTTCTTCATGAATGGAACTTGAGCTCTCTGGATGATCCAAGCTTATTGCCACTAGCTGCTGCCCTTGGGGACACCTTACAACAAAATTCATTTTCTAACCCAACAACAACGTTGTTCAATCCCAAAACTCCCATGGAAACTTCACTACTTTCTGGCATTGAAAGGCCTCGGAAACAGACCAAACCAAACAGTACAATTGATCAGAAGCAGACATTAGACACAGACTATGATTCTTGTTCCAATAATCTTCTTTCCTTTGTCAATTCAAGTTACATAAGCCAACTGGGGTCATTAAAGCCTTATTATAAGGAGCAGATACCATGTCCTGAAACCAATAGCACAATCCCTTTTTCAGACATGTCGGCCTCTCATGGATCCTTGGGAAATCAGAACTTTGTCTTCAATGCTACTAGCCAAGATCCCAGAAAGAATATTGGACCAAGTCCTAAACTTTCTCAATCTCAGGACCACATAATTGCTGAAAGAAAGCGGCGAGAGAAGCTTGCCCAGCGATTCATTGCTCTATCTGCACTTGTCCCTGGCCTTAAAAAGACGGACAAGGCTTCTGTTCTTGGGGATGCTATAAAGTATTTGAAGGAATTGCAAGAGAGAGTGAGGGTCCTTGAAGAGGAACAGAGTAGAAGGAGCATTGTGGAATCTGTGGTGGTTGTCAAGAAAACTCAGTTATTAGCCGATGAAGGACAAGATTGTTCTTCAGACTGTGGTGATTTTGTTAAGGAGGAGCCATTACCAGAAATTGAAGCTAGAATTTGTGAGAGAAACGTCCTCATAAGAGTTCACTGTGAGAAAATAACAGGAGTGATAGAAAAAACAGTCAGTGAGATTGAGAAACTTCATCTGATAGTCACCAGTACCAGCGTCATGACGTTTGGCAGTTCTGCTCTTGATATAACCATCATTGCTCAGATGGATAAGGACTTTAGCTTGAAAGTGAAGGAGCTTCTAAGAAGCCTACGCTCAGCTTTTGAATCTTTCATGTGA 1041 0.4159 MSPKLQEIMENPTFLHEWNLSSLDDPSLLPLAAALGDTLQQNSFSNPTTTLFNPKTPMETSLLSGIERPRKQTKPNSTIDQKQTLDTDYDSCSNNLLSFVNSSYISQLGSLKPYYKEQIPCPETNSTIPFSDMSASHGSLGNQNFVFNATSQDPRKNIGPSPKLSQSQDHIIAERKRREKLAQRFIALSALVPGLKKTDKASVLGDAIKYLKELQERVRVLEEEQSRRSIVESVVVVKKTQLLADEGQDCSSDCGDFVKEEPLPEIEARICERNVLIRVHCEKITGVIEKTVSEIEKLHLIVTSTSVMTFGSSALDITIIAQMDKDFSLKVKELLRSLRSAFESFM 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g2343 346 MobiDBLite consensus disorder prediction 144 169 - -
Acco06g2343 346 Pfam Helix-loop-helix DNA-binding domain 168 215 IPR011598 GO:0046983
Acco06g2343 346 Gene3D - 162 229 IPR036638 GO:0046983
Acco06g2343 346 PANTHER BHLH TRANSCRIPTION FACTOR 35 342 - -
Acco06g2343 346 Coils Coil 204 224 - -
Acco06g2343 346 MobiDBLite consensus disorder prediction 65 85 - -
Acco06g2343 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 227 IPR036638 GO:0046983
Acco06g2343 346 CDD bHLH_AtNAI1_like 165 239 - -
Acco06g2343 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 165 214 IPR011598 GO:0046983
Acco06g2343 346 MobiDBLite consensus disorder prediction 144 168 - -
Acco06g2343 346 SMART finulus 171 220 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g2343 Acco-ChrAcco06 19141302 19143531 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g2343 165 346 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 56.284 2.85e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco06g2343 HLH 6.3e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco06g2343 06 19141302 19143531 Acco06g2343 06 19141302 19143531 CCT
Acco06g2343 06 19141302 19143531 Acco06g2343 06 19141302 19143531 ECH