Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g2306 ATGGGTGAAGAGGAGGAAGTTTTGCCGGATCATCTGCGGTGCAAGCGCACCGACGGCCGCAAATGGCGGTGTAGCCGGAGAGTGATGGACAACGTGAAGCTCTGTGAGATTCACTATCTTCAAGGTCGCCATCGGCAGTATAAAGAAAAGGTCCCGGAGTCGCTGAAGCTTCAGAGAAAGCGTAAGAAAGGGCTTAAGAAGGATGACTCTGTTCTCAATAATGTCGAAGTGAAGGCACGGAAAGTGGTCAAGATGGCGAAGATGATGAGAAAAAGGATAAAAGTGTCAGATGATTCGGAGTCAATGGAAGCTCCTGTGGGGAAGAAGGTGTCCAAGCACGGTAATAAGCAGTTGGAGTTGATAAGGATGGTACTGAAGAGAGAGGTTGAGAAAAGGAAGAAGAAGAAGAAGATGAAGAGGAAGGAGGAGGAAGAGGAACGAGAGGAATTGCATTACAGTGACGGAGAGTTAACAAAGGAATTACCCAATGGGTTAATGGCAATTTCTATGGCATCAACGGCCCCAGAATACTGCAATGTAGGTTCTCAATGTGATGTTAAATTATGTGTTGATCATAAGGCAATTACTCCTCGTTACTTCAGGTCCAAGAATGTTGAGAGGCTGCCTGAGGGAAAGTTGCAGGTTTTACCGTATGGACGCAAGTGTAAGAGGAAGAAGTGTCATTGGTGTCAAAGAAGTGATTCTTGGAATCTAATAAAGTGTTCAAGCTGTCAAAAAGAGTTTTTCTGCATGGATTGCATTAAAGAACGGTATTTTGATACTCAAAATGAAGTTAAGATGGCATGTCCAGTTTGTCGAGGAACTTGCTCATGTAAAGACTGCTTGAAAAGTAAATGTAAAGACAACGAAACAAAGGAGTTTTTGGCTGGTAAAAGCAAAGTTGATAGAATACTGCATTTTCATTATTTGATTTGTACGCTCCTTCCTATACTGAAACAAATAAATGAAGACCTCAATGCTGAGATAGAAACAGAAGCTAAATTCAGAGGTAAAAGACCATCTGATATTCACATCAAGCAAGTTGAATGTTGCGGCAATGACAAAACTTACTGCAACCAATGCAAAACACCCTTTTTGGATCTCCATAGAAGCTGTCCAAGTTGTTCCTATAGCCTTTGCATGTGTTGTTGCAGGCAATCATGTCAAAGGAACTCCTCTGAAGAAATCATTACATCTATTTCTGAGTCATCTGAGGGGATGGAAGCCTGCCTTGCCAGTGAAAATCATCTTTTGGATAAGAAGGCCATCACCAACGGCAATTCAGTGGTGACTTTTTCATTGCATAAACGCACAAACTATGATGGTAATGGTGATGTATCTTGTCCACCAAAAGAACTTGGTGGTTGTGGTGATAATTTTCTTGAATTAAGATGTGTTTTTCCTTTAAGTCGGATCAAGGAGATGGAAGTAACAGCAGAAGAAATAGTTTGCAGCTATGACTTTCCTGAAACTTTGGACAAAAGTTTGAGCTGCTCATTGTGTCCAGACACAGATAATAAACTTGATGGATTTAAGCAGTTACAAGAAGCAGCTCTTAGGGAAGATTCGAAAGACAATTGGTTGTTTTATCCCACTGTTTCGGACATTGGTGGTGATAACTTTGAACACTTTCAGAAGCACTGGGGAAAAGGTCATCCTGTAGTAGTGCGAGATGTGCTCCGAAATACATCAAACCTCAGTTGGGATCCACTGGTCATGTTTTGTACTTATCTTGAGGGTAGCATCTCAAGATATGAGAATGACAAGGATGAACTTGAAGCTTGTTTGGATTGGTGTGAGGTGGAAATTAACATTAGGCAGTGCTTTACTGGATCTCTTAAATGTCAGCCACAGAAAAACATGTGGCATGATATGCTGAAATTGAAGTGGTTATTGTCTTCCCAACTATTCAAAGAATGGTTTCCAGCTCATTTTGCTGACGTAATTGATGCTCTACCACTTCAAGAATACATGAATCCTACATCTGGTTTTCTGAATCTAGCTATAAATCTGGCCCAGGGGAGCGTAATGCATGACCTAGGACCATATATCCATCTTTCATATAGCTGTGGTGATGAACAGAGTGACTTTGTGACAAAACTATCTTACGATTCATATGATGTGGTCAATATTATGGCTCACACCACGGATGTCCCTCTCTCTACAGAACAACTGACTAAAATAAGGAAGCTGCTGAAAAGGCACGGAAGTCTTTGTCGAAGGGATTCTTCTGAAATTAGTGCTGACCAATTAAAGGAACAGGGAGAGAAAGTAAATTCATCTGAAGACATTGAAATGACCAGGTTGCATAGAAAGGAGAGAGAAGAAAAACATTTTTCCAGCAGAGTCAACAGAACAGCTTGCATCGTTACTGAAGCAACAGATATAGCTTCTCAAAATACAGACAGCAAAATGTCGCAGGATGAAGAATGTGATTCTGATTCTGATTCTGAAAATCCTTATGGAAGTTCAAATAATGATAGAGATGGAAAGTTCATCAAACATTCGGGTGCCCAGTGGGATGTCTTTCGTAGACAAGATGTTCCAAAGCTCTTAGAATACCTTAAGAGACACTCTGCTGAATTTTCTCCTTCCCATGACAATCACGAGCAGGTTGATCATCCACTTTTAGATCAGAGCTTCTTTCTTGACAACACTCACAAGATAAGGCTCAAGGAGGAATATAAAATTGAACCATGGACTTTTGAGCAACATGTCGGCGAAGCTGTCATAATTCCTGCTGGATGCCCTTACCAGATTAGAAATTCTAAGTGTTGTGTTCATGTTGTATTGGAATTTGTTTCCCCTGAGAATGTCGCCGAGTGTATCCAATTGATTGATGAAGCCCGTCAGCTTCCAGAAGACCACAAAGCAAATGTTGACCATCTTGAGGTGAAGAAAATGTCTCTTTATAGCATCGATTCTGCAATTAAAGAGATACGTGAACTTACCTCCAAAACGTGA 2964 0.4092 MGEEEEVLPDHLRCKRTDGRKWRCSRRVMDNVKLCEIHYLQGRHRQYKEKVPESLKLQRKRKKGLKKDDSVLNNVEVKARKVVKMAKMMRKRIKVSDDSESMEAPVGKKVSKHGNKQLELIRMVLKREVEKRKKKKKMKRKEEEEEREELHYSDGELTKELPNGLMAISMASTAPEYCNVGSQCDVKLCVDHKAITPRYFRSKNVERLPEGKLQVLPYGRKCKRKKCHWCQRSDSWNLIKCSSCQKEFFCMDCIKERYFDTQNEVKMACPVCRGTCSCKDCLKSKCKDNETKEFLAGKSKVDRILHFHYLICTLLPILKQINEDLNAEIETEAKFRGKRPSDIHIKQVECCGNDKTYCNQCKTPFLDLHRSCPSCSYSLCMCCCRQSCQRNSSEEIITSISESSEGMEACLASENHLLDKKAITNGNSVVTFSLHKRTNYDGNGDVSCPPKELGGCGDNFLELRCVFPLSRIKEMEVTAEEIVCSYDFPETLDKSLSCSLCPDTDNKLDGFKQLQEAALREDSKDNWLFYPTVSDIGGDNFEHFQKHWGKGHPVVVRDVLRNTSNLSWDPLVMFCTYLEGSISRYENDKDELEACLDWCEVEINIRQCFTGSLKCQPQKNMWHDMLKLKWLLSSQLFKEWFPAHFADVIDALPLQEYMNPTSGFLNLAINLAQGSVMHDLGPYIHLSYSCGDEQSDFVTKLSYDSYDVVNIMAHTTDVPLSTEQLTKIRKLLKRHGSLCRRDSSEISADQLKEQGEKVNSSEDIEMTRLHRKEREEKHFSSRVNRTACIVTEATDIASQNTDSKMSQDEECDSDSDSENPYGSSNNDRDGKFIKHSGAQWDVFRRQDVPKLLEYLKRHSAEFSPSHDNHEQVDHPLLDQSFFLDNTHKIRLKEEYKIEPWTFEQHVGEAVIIPAGCPYQIRNSKCCVHVVLEFVSPENVAECIQLIDEARQLPEDHKANVDHLEVKKMSLYSIDSAIKEIRELTSKT 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g2306 987 MobiDBLite consensus disorder prediction 798 832 - -
Acco06g2306 987 MobiDBLite consensus disorder prediction 743 778 - -
Acco06g2306 987 SMART cupin_9 641 950 IPR003347 -
Acco06g2306 987 Pfam WRC 9 50 IPR014977 -
Acco06g2306 987 MobiDBLite consensus disorder prediction 131 151 - -
Acco06g2306 987 ProSiteProfiles JmjC domain profile. 660 950 IPR003347 -
Acco06g2306 987 Coils Coil 125 151 - -
Acco06g2306 987 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 10 986 IPR045109 GO:0032454|GO:0033169
Acco06g2306 987 Pfam JmjC domain, hydroxylase 836 931 IPR003347 -
Acco06g2306 987 SUPERFAMILY Clavaminate synthase-like 540 967 - -
Acco06g2306 987 ProSiteProfiles WRC domain profile. 8 54 IPR014977 -
Acco06g2306 987 Gene3D Cupin 532 959 - -
Acco06g2306 987 ProSiteProfiles Zinc finger RING-type profile. 227 273 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g2306 Acco-ChrAcco06 18549476 18557075 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g2306 9 48 GRF Transcription Factor Family AT2G22840 55.000 1.26e-07 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Acco06g2306 JmjC 5.2e-11 CL0029