Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g2300 ATGTCAACTGGGTATTTATATGGATGGTCTATGGGAAATCAAGATGATGGAACTGCTTATGTAACTTACAGTTTTCTTGACAAAGCTGCTTCTGGGATTCTTTCATTGACCCCACAAGGCAAGCTTAGGTTGGAATTCTCTAATGGAGGAACTGATCTCTATATTCGTGTGGCTCATTCAGAACTTGGAAAAGGTTCTGATAGAAGCACAAATAAGAGAAAAATCATCGTAGTGACAGTATCGGTTGGAACAGTTATCTTAGTTGCATTTGTTTGCCTGTCAGTCATCTATACCTATCGCTCTCGTAGCCAAATAGCCCATAAGCAAAGAGAAAATCAGAGTCAAAGAGTGAACGACACCAACAAACAAGTTAAGTTAGATGAGCTTCCGATATTTGATTTTGAAGAGGTTGCATCTGCTACAAATAACTTTCACTTAGCTAACATTCTAGGGAAGGGTGGTTTTGGCCCAGTTTACAAGGGGACATTGCAAGATGGTCAGGAAATTGCGGTAAAAAGACTGTCCAGAGCATCCGGGCAAGGGCAAGAAGAATTCATGAATGAGGTGTTAGTCATCTCGAAGCTTCAACATCGCAATCTTGTAAAACTTCTTGGTTGCTGCATTGAAGGGGATGAAAAGATGTTAATATATGAATTTATGCCAAATAAAAGCTTGGATGCATTTCTCTTTGATGCAATCCAAAGAAAATGTTTGGATTGGAGAAAAAGATTTAACATTATTGAAGGAATAGCTCGAGGTTTGCTTTATCTTCATAGAGATTCTAGGCTAAAAATCATACACAGGGATTTAAAAGCAAGTAATATCTTATTGGATGGGGAGATGCATCCAAAAATATCAGATTTTGGTCTAGCTAGAATTTTTGGAGCAAGTGAAGATATGGTCAATACTAAAAGAGTCGTTGGAACATATGGTTACATGTCTCCCGAATATGCAATGGAAGGTTTGTTTTCCGAAAAATCTGATGTCTATAGTTTTGGAGTTTTGTTATTGGAGATTGTTAATGGAAGTAGAAACAGCAGCTACCACACCGATCAAGAGTCTCTTAGCCTTATAGGACTTGCATGGAGGCTATGGAATGAAGAGAAAATTATATCTTTAGTAGATCCAGACATATGGGATTCATGCAATGGGAGCCAAATAATGAAGTGCATACACATAGGGCTTCTATGTGTGCAAGAAGCAGCGAAAGAAAGGCCAAGCATGACCAATGTGGTTATGATGCTTATAAGTGAGAATGTTCATCTTCCTCCTCCAAAGCAAGTAGCTTTTGTGCATAAGCATTGGGTTTCAAGTTCAGAGTCCTCTAATGCTAAGGAACGTCAAATTGATTCCCACAATAGTGTAACTTTTACTGATATTCAAGAAAGATCTGTCTTCAAGGGAGTCATTATTTGTCGGAAGATATCGCCAACTGAGCCAGTTGAAGACGTTAGAGTGTATGTGAAAACTCAGAAGCCTAGAAGGATGGATAAGATCTGTAGAGAACCTATTTCATCAAGACAAGTTTATGCTTTAAAAGCTGCAAGAATCTTCTCAAACTTCATTTCTGCAGAGAATGGTGCTTCAAATGTCATTAGTGCATATCTTCACCAGGCCTCTGCTTCGTTTAATGAACTGAATCGCCTTCATAAGGGGTCCAAATTGCTACAGTCTAATCAGAAGCACAAAGGGCTCAAAATTAAGTAG 1707 0.3861 MSTGYLYGWSMGNQDDGTAYVTYSFLDKAASGILSLTPQGKLRLEFSNGGTDLYIRVAHSELGKGSDRSTNKRKIIVVTVSVGTVILVAFVCLSVIYTYRSRSQIAHKQRENQSQRVNDTNKQVKLDELPIFDFEEVASATNNFHLANILGKGGFGPVYKGTLQDGQEIAVKRLSRASGQGQEEFMNEVLVISKLQHRNLVKLLGCCIEGDEKMLIYEFMPNKSLDAFLFDAIQRKCLDWRKRFNIIEGIARGLLYLHRDSRLKIIHRDLKASNILLDGEMHPKISDFGLARIFGASEDMVNTKRVVGTYGYMSPEYAMEGLFSEKSDVYSFGVLLLEIVNGSRNSSYHTDQESLSLIGLAWRLWNEEKIISLVDPDIWDSCNGSQIMKCIHIGLLCVQEAAKERPSMTNVVMMLISENVHLPPPKQVAFVHKHWVSSSESSNAKERQIDSHNSVTFTDIQERSVFKGVIICRKISPTEPVEDVRVYVKTQKPRRMDKICREPISSRQVYALKAARIFSNFISAENGASNVISAYLHQASASFNELNRLHKGSKLLQSNQKHKGLKIK 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g2300 568 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Acco06g2300 568 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 220 423 - -
Acco06g2300 568 Pfam Protein tyrosine and serine/threonine kinase 145 414 IPR001245 GO:0004672|GO:0006468
Acco06g2300 568 Gene3D Phosphorylase Kinase; domain 1 100 219 - -
Acco06g2300 568 SMART serkin_6 144 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco06g2300 568 CDD STKc_IRAK 150 415 - -
Acco06g2300 568 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 107 219 - -
Acco06g2300 568 ProSiteProfiles Protein kinase domain profile. 144 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco06g2300 568 Gene3D Transferase(Phosphotransferase) domain 1 220 422 - -
Acco06g2300 568 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 54 461 - -
Acco06g2300 568 SUPERFAMILY Protein kinase-like (PK-like) 129 446 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g2300 Acco-ChrAcco06 18485005 18490103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g2300 60 431 Receptor kinase-like Gene Family AT4G05200 52.547 1.28e-128 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Acco06g2300 PK_Tyr_Ser-Thr 1.4e-50 CL0016