Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g2298 ATGACGTGGATCGAAAGCACACAAATTTGGACCAAATTCTGGTACGCTCCGAAAGACCAGTGCGATTACTACAAACAGTGTGGTCCTTTCGGAGTTTGCGATGCGAATGCTTCGCCGGTTTGCGTGTGTGTGAGAGGTTTCAGGCCGAAGAACTTGCAGGCGTGGAATCTGAGAGATGGGTCAGATGGGTGTGTGAGGAACACAGAGCTGAATTGTGGGGGAGACAAGTTCTTGGAGATGAATAATGTGAAGCTGCCGGATACAACCTCGGTGTTCGCGAACAGGAGCATGAATGTTGTGGAATGTGAGGATTTGTGCCTGAAGGATTGTAACTGTACAGCGTATGCGAACATAGAAATCGGCAATGGCGGAAGTGGGTGCGTGATGTGGAGTGACGATCTTATTGACATAAGGCAGTATCCTCGAGGTGGACAGACTCTGTATCTCAGATTGGCAGCTTCTGATGTAGAATCGGCCAATGCTTCCCACAACGCAAAAGTAGCTGAAGTTGTAGGAATTACAGTTGCTGCTGCTGCAGTTGTTATACTTTTGGTATTGACTCTGTTTTTCTTGTGCAAGAAGAAGAAACTGCAACGCCTAATCATATCGAAACCAGAATATAGAGGCTCCTTAGAGAGAAGCCAAGATTTGCTAATGACTGAGGGAGTGATTTCAAGTAACAGAGGATACTCATCAGAAAGGAACAAGATGGATGACCTGGAATTGCCATTGTTTGATTTTAATACTATAAGAATCGCTACAAACAACTTTTCTGAGTCAAATAAACTTGGACAAGGTGGCTTTGGTACTGTTTACAGGGGTAGGCTGGTGGAAGGACAGGAAATTGCTGTGAAGAGATTGTCAAAAAGCTCTGTGCAAGGGGTTGAAGAGTTCAAGAATGAGGTCATGTTAATTGTTAGGCTTCAGCACCGGAATCTTGTTCGGCTATTTGGTTGTTGCATTGAGATGGAAGAGAAGATGTTGGTTTATGAATACTTGGAGAATAGAAGCCTTGATTCCATTTTGTTTGACAAAGCCAAAAGATCTTTGTTGGATTGGCAAATGCGATTCAACATTATATGCGGAACAGCAAGAGGTCTTCTCTATCTTCATCAAGATTCCAGGTTTAAGATAATCCATAGGGATCTCAAGGCAAGCAACGTTCTACTTGACAAAGAAATGAATCCAAAAATATCAGATTTTGGGATGGCTAGAATCTTCACCTCCAACCAGTCACAAGCAAATACATTGAGAATTGTAGGAACATATGGCTACATGTCTCCTGAATATGCTATGGATGGAATCTTCTCAGTAAAATCAGATGTTTTCAGTTTTGGGGTATTGGTATTAGAGATCATTAGTGGCAAAAAGAACAGAGGATTCTATTACGCAAACAAGGAGCTGAATCTTCTTGGACACGCTTGGATGCTGTGGAAAGAAGGAAATGCCTTGGAACTGGTAGATTCATCCTTCGGTGATTCGTATGTTAAATCCGAAGTTCTTAGATGCATACAGGTTGGACTCTTGTGTGTCCAAGAGCGTGCAGAAGATCGGCCAACGATGTCTACAGTAGTGTTGATGCTGAGTAGTGAAACTGCAACAATGCCGCAGCCCAAAAACCCAGGATTTGCCCTGGGAAGAAATCCCGTTGAAACCGATTCTTCTTCGAGCAAGGTGGACGAATCATGCACTGTGAACCAAGTTACAGTCACAATGCTAAATGCCAGGTAG 1731 0.4333 MTWIESTQIWTKFWYAPKDQCDYYKQCGPFGVCDANASPVCVCVRGFRPKNLQAWNLRDGSDGCVRNTELNCGGDKFLEMNNVKLPDTTSVFANRSMNVVECEDLCLKDCNCTAYANIEIGNGGSGCVMWSDDLIDIRQYPRGGQTLYLRLAASDVESANASHNAKVAEVVGITVAAAAVVILLVLTLFFLCKKKKLQRLIISKPEYRGSLERSQDLLMTEGVISSNRGYSSERNKMDDLELPLFDFNTIRIATNNFSESNKLGQGGFGTVYRGRLVEGQEIAVKRLSKSSVQGVEEFKNEVMLIVRLQHRNLVRLFGCCIEMEEKMLVYEYLENRSLDSILFDKAKRSLLDWQMRFNIICGTARGLLYLHQDSRFKIIHRDLKASNVLLDKEMNPKISDFGMARIFTSNQSQANTLRIVGTYGYMSPEYAMDGIFSVKSDVFSFGVLVLEIISGKKNRGFYYANKELNLLGHAWMLWKEGNALELVDSSFGDSYVKSEVLRCIQVGLLCVQERAEDRPTMSTVVLMLSSETATMPQPKNPGFALGRNPVETDSSSSKVDESCTVNQVTVTMLNAR 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g2298 576 ProSitePatterns Serine/Threonine protein kinases active-site signature. 378 390 IPR008271 GO:0004672|GO:0006468
Acco06g2298 576 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 27 554 - -
Acco06g2298 576 Gene3D Phosphorylase Kinase; domain 1 231 332 - -
Acco06g2298 576 Pfam Protein tyrosine and serine/threonine kinase 260 526 IPR001245 GO:0004672|GO:0006468
Acco06g2298 576 ProSitePatterns Protein kinases ATP-binding region signature. 263 285 IPR017441 GO:0005524
Acco06g2298 576 SMART ntp_6 72 151 IPR003609 -
Acco06g2298 576 SMART serkin_6 257 528 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco06g2298 576 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 333 536 - -
Acco06g2298 576 MobiDBLite consensus disorder prediction 537 561 - -
Acco06g2298 576 ProSiteProfiles Protein kinase domain profile. 257 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco06g2298 576 CDD PAN_AP_plant 68 152 - -
Acco06g2298 576 Pfam Domain of unknown function (DUF3403) 530 576 IPR021820 GO:0004674
Acco06g2298 576 Pfam PAN-like domain 72 137 IPR003609 -
Acco06g2298 576 Gene3D Hepatocyte Growth Factor 67 151 - -
Acco06g2298 576 Pfam S-locus glycoprotein domain 2 51 IPR000858 GO:0048544
Acco06g2298 576 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 222 332 - -
Acco06g2298 576 Gene3D Transferase(Phosphotransferase) domain 1 333 540 - -
Acco06g2298 576 CDD STKc_IRAK 263 528 - -
Acco06g2298 576 Pfam Receptor serine/threonine kinase 212 247 IPR022126 GO:0004674
Acco06g2298 576 SUPERFAMILY Protein kinase-like (PK-like) 237 528 IPR011009 -
Acco06g2298 576 ProSiteProfiles PAN/Apple domain profile. 72 152 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g2298 Acco-ChrAcco06 18454332 18460214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g2298 245 576 Receptor kinase-like Gene Family AT4G11530 59.347 5.97e-138 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Acco06g2298 PK_Tyr_Ser-Thr 5.8e-47 CL0016