Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g2297 ATGGCGACTCACCTTCCCGACCACTTTAAGTGTCCGATTTCCCTGGAGATAATGTCCGACCCAGTTATCATTCCCTCGGGTCACACCTTTGACCGTTCTTCCATCCAACGCTGGCTCGACGCCGGTCACCGGGTTTGTCCGATTACCAAATTGCCCCTCCCTGATTATCCTTCCCTCATCCCCAACCATGCTCTCAGAAGTTTGATTTCCAACTATGCACTCATTTCGCCTCTGCAGCAGCAGCTTCCTCCCCATCCTGAAACCCTAATCTCCTTGCTCACTTCTCGGTCTTCCCCCTTGGAATCTAAAGTTGAGTTACTTGGCCAACTCATCCGGCTTTCCCAGCGTGACTCGTTGTTTCGCCGGCGGTTGACTGAGTCAGGGGTCGTGTCGGCGGTGCTGAACTGCGTTGACTCCGGTGATTCTGGTCTTCAGGAGAAAGCCCTCTCCCTGCTATTGAATCTAAGTCTTGACGATGATAACAAGGTTGGTTTGGCTGCGGAAGGTGTGATAGCTCGAGTTGTGGCTGTTCTGCTTGGTGGCTCACCTAATTGCAGAGCGATTGCAGCAACTATGCTCACCAGCTTGGCGGTTGTGGAAGTAAATAAAGCCACGATTGGTGCATACCCATGTGCGGTTGAGACTCTGGTTTCGCTTCTTCGGAATGGTAAAGGGAGAGAGAAGAAGGAAGCTGCCACGGCGCTTTATGCAATCTGTTCATTTCCTGATAATCGAAGGAGAGCCATAGAATGTGGGGCAGTCCCTGTTTTGCTTGGAAGTGCTGATTCTGGGCTTGAGAGGGCCGTTGAAGTTCTAGGTATTCTGGCCAAGTGTAAGGAAGGTAGGGAACAAATGAAAAGCTATCATGGATGCATACAGATTCTGGCTCGGGTTTTGAGGAATGGAAGCTCGAGGGGAATTCAATATGCACTGTTGGCACTGAACTCTCTTTGTTGTAGTAGTGAAAAAATGAGACTAGAGGCTGCAAAAGAAGGAGTTTTGGAGATTGGTCTTCAATTGCTGGATGATGATAGTGAGAAAGTAAGGAGGAACTCTTCCAATTTGATTCAGGTTCTGCGTGGAAACCAGTGGACAAGTTGA 1101 0.4941 MATHLPDHFKCPISLEIMSDPVIIPSGHTFDRSSIQRWLDAGHRVCPITKLPLPDYPSLIPNHALRSLISNYALISPLQQQLPPHPETLISLLTSRSSPLESKVELLGQLIRLSQRDSLFRRRLTESGVVSAVLNCVDSGDSGLQEKALSLLLNLSLDDDNKVGLAAEGVIARVVAVLLGGSPNCRAIAATMLTSLAVVEVNKATIGAYPCAVETLVSLLRNGKGREKKEAATALYAICSFPDNRRRAIECGAVPVLLGSADSGLERAVEVLGILAKCKEGREQMKSYHGCIQILARVLRNGSSRGIQYALLALNSLCCSSEKMRLEAAKEGVLEIGLQLLDDDSEKVRRNSSNLIQVLRGNQWTS 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g2297 366 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Acco06g2297 366 PANTHER U BOX DOMAIN-CONTAINING 6 356 - -
Acco06g2297 366 SMART arm_5 278 319 IPR000225 GO:0005515
Acco06g2297 366 SMART arm_5 158 198 IPR000225 GO:0005515
Acco06g2297 366 SMART arm_5 117 157 IPR000225 GO:0005515
Acco06g2297 366 SMART arm_5 202 240 IPR000225 GO:0005515
Acco06g2297 366 SMART arm_5 320 361 IPR000225 GO:0005515
Acco06g2297 366 SMART arm_5 241 277 IPR000225 GO:0005515
Acco06g2297 366 SUPERFAMILY ARM repeat 87 359 IPR016024 -
Acco06g2297 366 CDD RING-Ubox_PUB 6 55 IPR045210 -
Acco06g2297 366 Gene3D - 84 209 IPR011989 -
Acco06g2297 366 FunFam RING-type E3 ubiquitin transferase 4 76 - -
Acco06g2297 366 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Acco06g2297 366 Gene3D - 210 363 IPR011989 -
Acco06g2297 366 SUPERFAMILY RING/U-box 4 73 - -
Acco06g2297 366 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Acco06g2297 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 76 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g2297 Acco-ChrAcco06 18429140 18430240 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g2297 1 361 U-box Gene Family AT4G21350 61.789 7.60e-154 436