Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g2278 ATGGATCCTTCCCAACACTCCAGTGAAGTAAATCAAATTGCATCGAATGACAATAGCGTCACCGACCCAGCCAATCATGACGGCGATGAAACATTACATAATGAATTGGTTTCCATTTTGGATATGTTAGCTACATTTTCGGATGCCATGGAAGAAGAAGACCCCATTCAAGGAGTTGATAATGGCGATGGTTTAGATTTTGGTGTCGGTGATATGCGAAGGTATATTGAGGAAATGATGAGGGCGCCGACGGGGATGAACAACCAAAATGGAGATGACCAGATGGCCGGGCCGGTTTCTGGAACTCCGGCAACTGTATCATCCATTTTAGAGAAGGTGACTCTGGTTGAACAGAAAGATGAAGAAGGGAGCACAAATATTGGTAAGTTTGAATGTTCGATTTGCTTTGAAGGTTCTTCAAATGACCCTGAAGCTTCTCGTATGCCTTGTTCTCATTTGTTTCACACAAAATGTATCGTTTCCTGGCTCCATACTCGCAATACTTGTCCTCTTTGCCGATTTGAACTGCCTACTGGTGATGAAAAGTGA 549 0.4335 MDPSQHSSEVNQIASNDNSVTDPANHDGDETLHNELVSILDMLATFSDAMEEEDPIQGVDNGDGLDFGVGDMRRYIEEMMRAPTGMNNQNGDDQMAGPVSGTPATVSSILEKVTLVEQKDEEGSTNIGKFECSICFEGSSNDPEASRMPCSHLFHTKCIVSWLHTRNTCPLCRFELPTGDEK 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g2278 182 SMART ringv_2 131 173 IPR011016 GO:0008270
Acco06g2278 182 ProSiteProfiles Zinc finger RING-type profile. 132 173 IPR001841 -
Acco06g2278 182 MobiDBLite consensus disorder prediction 1 22 - -
Acco06g2278 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 179 IPR013083 -
Acco06g2278 182 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 41 177 - -
Acco06g2278 182 Pfam Ring finger domain 131 173 IPR001841 -
Acco06g2278 182 SMART ring_2 132 172 IPR001841 -
Acco06g2278 182 MobiDBLite consensus disorder prediction 1 30 - -
Acco06g2278 182 CDD RING-H2_PA-TM-RING 131 173 - -
Acco06g2278 182 SUPERFAMILY RING/U-box 131 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g2278 Acco-ChrAcco06 18153813 18154361 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g2278 99 180 C3H Transcription Factor Family AT3G02340 39.024 1.77e-17 77.0