Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g2277 ATGGATCCTTCTCATCACTCCAATGAAGTTAATCAAATTCCAACAAACGACCATACCATTACCGACCTAGCCAATCTTGTTGATGACGAAACATTACGTAATGAATTTGTTTCCTTTTTGAATATGGTCGCTGCACTTGCGGAAGCCATGGAAGAAGAAGACCGCCTTCAAGGAGTTGATAATGGTGGTGATATACGTGGGTATATTGAGGAAGTGAGGAGGGCCGCGACGATGATGAACAACCAAAATGTGACTGGAACTCCGGCAACTGAATCATCCATTGAAGCATTGGAGAAGGTGACTGTGGTTGAACAAAAAAAAGAAGAAGAAGAAGGAAGCACAATGGCTAAGTTTGAATGTTCTATTTGCTTTGAGGGTTCTTCAAATGACCCTGAAGCTTCTCGTATGCCTTGCTCCCATTTGTTTCACACAAAATGTATCATTTCCTGGCTTCATACTCGCAATACTTGTCCTCTTTGCCGATTTGAAATGCCAACAGGTGATGAAAAATGA 513 0.4172 MDPSHHSNEVNQIPTNDHTITDLANLVDDETLRNEFVSFLNMVAALAEAMEEEDRLQGVDNGGDIRGYIEEVRRAATMMNNQNVTGTPATESSIEALEKVTVVEQKKEEEEGSTMAKFECSICFEGSSNDPEASRMPCSHLFHTKCIISWLHTRNTCPLCRFEMPTGDEK 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g2277 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 167 IPR013083 -
Acco06g2277 170 SMART ring_2 120 160 IPR001841 -
Acco06g2277 170 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 47 165 - -
Acco06g2277 170 Pfam Ring finger domain 119 161 IPR001841 -
Acco06g2277 170 SMART ringv_2 119 161 IPR011016 GO:0008270
Acco06g2277 170 ProSiteProfiles Zinc finger RING-type profile. 120 161 IPR001841 -
Acco06g2277 170 SUPERFAMILY RING/U-box 97 165 - -
Acco06g2277 170 CDD RING-H2_PA-TM-RING 119 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g2277 Acco-ChrAcco06 18149667 18150179 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g2277 64 169 C3H Transcription Factor Family AT5G01980 36.792 9.96e-18 77.8