Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g2259 ATGGCCACTGTTGGGTCTTCTTCTTCTTCTACTTGTTCTTCTTTGTCAAAGGTCTGCTACAATCGCGAGTGTAAAGAATTGAAGTCAGACAGACCTAAGAAGGGTTGGAGACTCCGTACTGGAGACTTCGCTGAGCTCTGTGATCGATGCGGTTCTGCTTTTGAGGAAGGAAGGTTCTGTGAGACTTATCATGCAAAAGTTCCTGGTTGGAGGAAATGTGAATCATGTGGGAAGGAGATTCATTGCGGGTGTATTGTTTCATGTACAGCCTTTATGTTGTTGGATCCTGGAGGCATTGAATGCATTCCATGCGCCAGAAACCATCTTTTGTCATCTAGTCTAGCCCAACCCTCTTTATTTCAAAGTCGTTTTACTTCAAAATATTGGAGTCAGTTGGCTGGATCAGGTCCTGTGCCATGGAAGCAAGCACCCAGTCTATTCAATACAACTTCATCTGACCAGCACCCAGATGTGCCATCGGTAGTTGAAATATCTAGTGTTGACAATATTTATGGAAATGAAAGGATATCTGCCTCATCTCTGGAAAAGAAATGTGAAAATCTTTCTGGAATACCAGCTAATTGGAATGTAAAGATTGGTGCACGTGAAATGATGTTTATAAATGGAATGCGTAATGATGAAAAGGTTAGTTCATGCTTGAATATGTGCCAGCAACCTTCTCTAAAGCAGGATTCATCAACCCAACCATTTGGTTTGACTGTGCCTTATATTCATCAAAATGAAAGAAATGGTCAAGTTGGGGTAACTGGAAGTCATCCGCAACAAACTCCTCCACCTCCCCATGGAAAGCAATTTAGTGGCCCAATACAGGGTGCACCTGATTCATCAGGTGAGTCACAGGTGCGAAATGGAAGGCCCAAAGCAGATGCCCGAGGAAGGAACCAGTTACTGCCCAGGTACTGGCCTAGGTGCACAGATCAGGAGCTGCATCAAATATCTCTTGACTCTAATTCTGTTATAACTCCATTGTTCCAAAAAACGTTGAGTGCTAGTGATGCTGGGCGAATTGGGCGTCTAGTGCTACCAAAAAAATGTGCTGAGGCCTACTTTCCACCAATTTCTCAGCCTGAAGGGTTGCCACTTAAAATCCTTGATGCAAAAGGCAAGGAATGGATATTTCAATTTCGCTTTTGGCCCAACAATAACAGTAGAATGTATGTTTTAGAAGGTGTAACTCCGTGCATACAGTCCATGCAATTGCAAGCTGGTGACACAGTAACATTTAGTCGGTTGGAGCCAGAGGGGAGGTTGGTTATGGGATTTCGAAAGGCTTCAAGTGCTGCTCAATCTGATCAGGACAACGAAACAAACAATACTGGAAATGGATGTTCTACACATGAAGTTGAATTGGATCCTAGTTCATGGTCTAAAGTTGACAAATCAGGATATATAGCAAAAGAAGCATTGGGGGGCAAATCTTCCATTTCTAGGAAGAGAAAGAGTAGTGCTTTGGGTTCCAAGAGTAAGCGATTAAGAATTGAAAATGAGGATCTAATAGAGTTGAATATTACATGGGAAGAAGCTCAAGGCCTACTCCGTCCCCCTCCTAACCTTGTTCCCAGCATTGTGGTGATTGAAGGTTTTGAATTTGAGGAGTATGAGGATGCTCCAGTACTGGGGAAACCAACAATTTTTGCTACTGACAGTGTGGGTGAAAAGATCCAGTGGGCTCAATGTGAAGATTGTCAAAAATGGCGCAAATTGCCAGCTAATGCTCTTCTAACATCAAGATGGACATGTTCAGATAATCCATGGGACCCAGAAAGATCTTGTTCGGCTGCACAGGAGTTGACAGCAGAACAGCTTGAAGATTTGTTTCCCCCTTGTCATTCAGTTGTATCCAAGAAAATGAAGACTGCCAAGCAGGATCCCGATAACGTCGAAGCTTTGGAAGGACTTGACACTCTTGCCAACCTTGCTATATTGGGAGAAGGGGAGGTTCTCCCATCGTCTGCCCAGGCCACAACAAAACACCCTCGGCATAGACCTGGCTGCTCTTGCATTGTTTGCATTCAGCCTCCTAGTGGGAAGGGGCCCAAGCATAAGCAGACTTGCACATGTAATGTTTGCTTAACGGTGAAGCGCCGTTTCCGTACCTTGATGTTACGGCGTGAGAAGAAACAATCAGAGAGAGAAGCAGAGACAACACGTAAAAAGCAGCAGCCCCTGCCACCTCAGCCACCACCACCTATGTCAGAGATATTGGTTGATGATGATTCCCTGCCTTGCAGTAACACAGGAGATAGTGGCAGTCCTAATCAGAACAGGGAGGGCAATGAAGGTTCCGATGAAGACCCTAACAAGACAAAGTCATCCGCCTCGCCATTTAAGGGCCAGATTGATCTCAATATTCAGCCAGAGCGAGAGGAAGAGCTGTCTCCCAGTTCAGATTCTGGAAGCATGATTAAGTCGCTCCATAATCATGAGAGGTATCCGAGGCAGCAGAGTATGGCGAACTCTTTTGCCGGAGATACTTCAGGTGGACAATCGCAGCAAGTTGGAGATGACGTGAGGCAGGAGAACCTTTGCAATGGTGTTGCCCTTGGCAGCAGCAATCATAATGCTGACAAGGAACATGCCCAAACATTGTCTATGAACGTGTGA 2625 0.4503 MATVGSSSSSTCSSLSKVCYNRECKELKSDRPKKGWRLRTGDFAELCDRCGSAFEEGRFCETYHAKVPGWRKCESCGKEIHCGCIVSCTAFMLLDPGGIECIPCARNHLLSSSLAQPSLFQSRFTSKYWSQLAGSGPVPWKQAPSLFNTTSSDQHPDVPSVVEISSVDNIYGNERISASSLEKKCENLSGIPANWNVKIGAREMMFINGMRNDEKVSSCLNMCQQPSLKQDSSTQPFGLTVPYIHQNERNGQVGVTGSHPQQTPPPPHGKQFSGPIQGAPDSSGESQVRNGRPKADARGRNQLLPRYWPRCTDQELHQISLDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSAAQSDQDNETNNTGNGCSTHEVELDPSSWSKVDKSGYIAKEALGGKSSISRKRKSSALGSKSKRLRIENEDLIELNITWEEAQGLLRPPPNLVPSIVVIEGFEFEEYEDAPVLGKPTIFATDSVGEKIQWAQCEDCQKWRKLPANALLTSRWTCSDNPWDPERSCSAAQELTAEQLEDLFPPCHSVVSKKMKTAKQDPDNVEALEGLDTLANLAILGEGEVLPSSAQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQSEREAETTRKKQQPLPPQPPPPMSEILVDDDSLPCSNTGDSGSPNQNREGNEGSDEDPNKTKSSASPFKGQIDLNIQPEREEELSPSSDSGSMIKSLHNHERYPRQQSMANSFAGDTSGGQSQQVGDDVRQENLCNGVALGSSNHNADKEHAQTLSMNV 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g2259 874 MobiDBLite consensus disorder prediction 429 459 - -
Acco06g2259 874 Pfam B3 DNA binding domain 331 430 IPR003340 GO:0003677
Acco06g2259 874 ProSiteProfiles Zinc finger CW-type profile. 557 606 IPR011124 GO:0008270
Acco06g2259 874 SMART B3_2 331 432 IPR003340 GO:0003677
Acco06g2259 874 MobiDBLite consensus disorder prediction 432 458 - -
Acco06g2259 874 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 16 834 - -
Acco06g2259 874 MobiDBLite consensus disorder prediction 250 299 - -
Acco06g2259 874 FunFam B3 domain-containing transcription repressor VAL1 309 436 - -
Acco06g2259 874 Gene3D - 552 608 - -
Acco06g2259 874 Gene3D - 309 436 IPR015300 -
Acco06g2259 874 MobiDBLite consensus disorder prediction 709 810 - -
Acco06g2259 874 MobiDBLite consensus disorder prediction 749 764 - -
Acco06g2259 874 SUPERFAMILY DNA-binding pseudobarrel domain 328 430 IPR015300 -
Acco06g2259 874 CDD B3_DNA 329 430 IPR003340 GO:0003677
Acco06g2259 874 MobiDBLite consensus disorder prediction 825 874 - -
Acco06g2259 874 MobiDBLite consensus disorder prediction 710 725 - -
Acco06g2259 874 Pfam CW-type Zinc Finger 562 603 IPR011124 GO:0008270
Acco06g2259 874 ProSiteProfiles B3 DNA-binding domain profile. 331 432 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g2259 Acco-ChrAcco06 17893186 17904620 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g2259 17 714 B3 DNA Binding Superfamily AT4G32010 46.629 0.0 581
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Acco06g2259 B3 9.5e-16 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco06g2259 06 17893186 17904620 Acco06g2259 06 17893186 17904620 ECH