Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g2233 ATGGCGGACGAGGGGTTCGATTTCTCGGAACTGCTTGACGGAGATGCTGATGCTGATGATAAGTTGTGTATAGATCTTGATACCGTTTTGAATGTCCTTGATGAGGATTATGATCCTTCGGAGAGTAGTCTGGAGGGTTTTTCATTAAAAAATGTCTCACCTGGCGAATCCAGCAACCATGATAATTTTCAGCTTCAAATTGGAAATTCTACGCTTTGCTGTGATAATGAAAATCAAGGACCTCCTTCACAGACTTGCTCATCCTCTCATGCTGTCCCTAATGGTTTTCAGCAGTTGGATCATGTCAATGAAGGTAACAAAATTTGCCACACAGAAAGGGAAGTTACTTTGGGATTTGAAATGCCAGCCCGATCTTCGGAACCTAGTGTCCCTGAGCCACATCTCAACAATATATTAGCATGTGGGGATAATTTGATTTTGAATCCTCTCTGGAAGGAAAAAAATGAGAGCCAGCTCAAGCATGTGGGAGATGATGTTAAATCTGAAAATGCTTCATACAGCCCTATGATTGAGAATGGTGATGCAAGTTTTGAACAATATCCAGCTTTTGATGAGGATATGTGTGAAGGAGTTTCTGGGCAACTTGAAAATGACTCGTGTACATCTTTTGAAATGCCATTCATGGATGCTAATGGATGTTCACATTTTGCAACATCAACCATTTCTACTATTTTCCAAGGCTCCAATGCTCGTGGCGATTCTCGTGACTACTTTTCATGCCTTCATGGTTACGACAGCACAGATGATAGACTTCTAGCTTCTTATTTGCCTAATGTTTTTGACTCTCAATTTTGGCCAAATCGAGAAGTTCTTGATAACGTGAAGGGTGAAAATGTGGAATATGCAGCTGATGCCTCACATGTGAGTAGTAACATGCATTCCAGTTCTACTGGTGGGATTTCATTTCAAGATAATCAATTTATATCTGCAGATAGTGAATTTTCTTCATTTTTACATGGTAATGCTTCATACTTTCCATGCAAAGACCAAATCGTTTGTGTCAAAGGCGGAAGAGATGAGCCAATTGCACCTTACCAGAACGCTGTTTATGGAGATTACTTGGACTTTAATGGAGGCCAAGAGATGAATCAATTAAATGGAGGCCAAGAGATGAATCAGTTAAATGGAGGCCTAGAGATGAATCAGTTTAATGGATGCCTAGATATGAATCAGTTAAATGGTGCTTTTCCTTCCATGGGAAATATTTTTAATTTGTTAGAGCGTGAGGACAAAGATGCTGATATATTATCCCACATACAGCGTCATCAAGAGATGATTGATGCTACTAGCTTCAAATTTCCAAGAGACGCTCCTAATTTAAATGGACATGCCTTAGCCAAATCTTTGCTGAATGCCCAAGCATCAATTAGCACTGAGAAGAAGTTTGGTTATGTTAAAAATGAAGGGGAGGCAAAAATGATTCAATGTGGGAATTTTGATTACCACGTTTCTAAAGCTGACCCTGAATTGGTTCACAGAAGTTTTTTAGAGAAATCCCATGTTGAGGATGTTGACTCTGATGTCTGTGTGATTGAAAGCATTAGTCATCCTGCACCAAAAAATGGATCAGCAGACCATCAGAATTTTCATAAGATATCACAGCACTCTGCATATGGTGATTCACAACCTTACATGTCACGGAGCACAAGGCTGAAGGCCTGTGATGAGCAAAATATATTACAAGTTGCTCTACAAGATTTATCTCAGCCAAAGTCAGAAGCTTTACCCCCAGATGGATTGATGGCTGTTCCTCTATTAAGACATCAGAGAATTGCTTTGTCATGGATGGTTCAAAAGGAAACATCAAGTTTTTACTGCTCAGGGGGAATCCTTGCAGATGATCAGGGACTTGGAAAAACAGTGTCGACTATTTCTTTGATACTAAAGGAAAGACCTCCAAAACTAACAGCTTGCCACAATGCACAAAAGGGTGAATTAGAAACTTTGAATCTGGAGGTTGATGATGATGTTCTTGCTGAGGGTGGTGGAGTGAAGGAAGACGAACCTAGTGTAAGTCCAATTGAAAGCAAGAACTTGGTGCAAACAAAGGGAAGGCCATCTGCAGGAACACTTATTGTTTGTCCCACTAGCGTGCTAAGGCAATGGGCTGAAGAGTTGAAAAATAAGGTAACCAGCAAAGCAAATCTCTCTGTGCTAGTGTACCATGGAAGCAATCGAACCAAAGATCCATATGTGCTGGCCAAGTATGATGTTGTTCTGACAACTTATTCAATTGTCAGCATGGAGGTACCTAAGCAGCCTCTGGTTGACAAAGATGAAGAGAAAGGAAATTCTGAAGTTCATGCTGGTCTACCGCCTACTAAGAAAAGGAAATGCCCTCCTAGTAGAAATGGCAAGAAGAGATTAGACTCTGCCTTGCTTGAGGCTTCTGCCCGCCCTTTAGCAAAGGTGGCATGGTTTAGAGTTGTCTTGGATGAGGCCCAGAGTATAAAAAATTTCAGAACTCAAGTTGCAAGGGCCTGCTGGGGTCTTCGTGCGAAGCGAAGATGGTGCTTGTCTGGGACTCCTATCCAGAATGCTATTGATGATCTTTATAGTTATTTTAGATTTCTCAGATATGACCCTTATGCTGTATATAATACATTCCTTTCTTCTATTAAGATACCAATAAACAGAAATCCAAACAAAGGGTATAGAAAGCTACAAGCTGTCTTAAAGACCATAATGTTACGCAGGACAAAAGGCACACTTCTTGATGGGGAACCTATTATTACACTGCCACCTAAACATGTGAAGCTGAAAAGAGTGGATTTTTCAAGTGAGGAGCGTGATTTCTATTCCAGATTGGAAGCTGATTCCCGTGCACAATTTCAGGAATATGCTAATGCTGGAACTGTCAAGGAAAATTATGTCAACATTCTTTTGATGCTTTTACGCCTTCGACAAGCTTGTGATCATCCTCTACTTGTTAAGCGCTATGATTCTAACACTTTATGGAGATCTTCAGTTGATATTGCAAAGAAGCTTCCTTGGGAAAAGCGAACATCACTTCTGAAATGTTTGGAGTCCTCCTTGTCTCTTTGTGGCATCTGTAATGATTCTCCTGAAGATGCAGTTGTTTCAGCTTGCGGTCATGTATTTTGTAACCAGTGCATTTCTGAACATCTCACTGGTGATGACAATCAGTGCCCTACCACAAATTGCAAAGCTCAATTGATAATGTCTTCAGTGTTTTCCAGAGCAACATTGAGCTGTTCTCTTTCTGATCAGGCTAGTAATAGTTTGGTTGGTTGCTCTGGTTCTGAAGTGGAGGGTTATGGGCCTTGTTCTCAGAGTCGGCCATCTGATTCTTCAAAAATTAAGGCTGCTCTTGAGGTATTGAACTCATTGTGTAAGCCACAGGTTAATGCATCAAAAAATATTTCGATGCAGATTAATTCTGATGAACATGGTGACTGCCATGGGAATTCCTCTGATTGCAACAAGGTGAAATCTTTGAAGGATTTTCCTGAGAGCCAAAAAGTGTCGGATGGAAGTTCTAATGATTTGATTGTTAGAGAGAAAGCTATTGTATTTTCTCAGTGGACAAGGATGTTGGATTTGCTGGAAGCATGTCTTAAGAATTCTTCAATTCAGTATAGGAGGCTTGATGGCACGATGTCAGTTGCTGCTAGGGATAAAGCTGTTAAAGATTTTAATACTCTCCCTGAGGTAACAGTCATGATTATGTCTTTGAAAGCCGCCAGTCTTGGCCTCAACATGGTAGCTGCCTGCCATGTACTTTTACTTGATCTATGGTGGAACCCAACAACAGAAGATCAAGCAATTGACAGAGCGCATCGAATTGGGCAGACTCGCCCTGTAACTGTTTTACGGTTGACTGTGAAAGATACGGTTGAAGATCGTATTTTAGCACTACAGCAAAAGAAGCGGAAGATGGTTGCATCTGCGTTTGGAGAAGATGAAACTGGCGGTCGTCAAAGTCGCCTCACAGTGGATGATTTAAAATACTTGCTGCTAGTGGCTGCAGAAGTCAGGAAACAACAAACAGGACATTTGCTAACCAATACTGACAGTAACCGTAGAGGTTCTGGTGACGATTGA 4086 0.4094 MADEGFDFSELLDGDADADDKLCIDLDTVLNVLDEDYDPSESSLEGFSLKNVSPGESSNHDNFQLQIGNSTLCCDNENQGPPSQTCSSSHAVPNGFQQLDHVNEGNKICHTEREVTLGFEMPARSSEPSVPEPHLNNILACGDNLILNPLWKEKNESQLKHVGDDVKSENASYSPMIENGDASFEQYPAFDEDMCEGVSGQLENDSCTSFEMPFMDANGCSHFATSTISTIFQGSNARGDSRDYFSCLHGYDSTDDRLLASYLPNVFDSQFWPNREVLDNVKGENVEYAADASHVSSNMHSSSTGGISFQDNQFISADSEFSSFLHGNASYFPCKDQIVCVKGGRDEPIAPYQNAVYGDYLDFNGGQEMNQLNGGQEMNQLNGGLEMNQFNGCLDMNQLNGAFPSMGNIFNLLEREDKDADILSHIQRHQEMIDATSFKFPRDAPNLNGHALAKSLLNAQASISTEKKFGYVKNEGEAKMIQCGNFDYHVSKADPELVHRSFLEKSHVEDVDSDVCVIESISHPAPKNGSADHQNFHKISQHSAYGDSQPYMSRSTRLKACDEQNILQVALQDLSQPKSEALPPDGLMAVPLLRHQRIALSWMVQKETSSFYCSGGILADDQGLGKTVSTISLILKERPPKLTACHNAQKGELETLNLEVDDDVLAEGGGVKEDEPSVSPIESKNLVQTKGRPSAGTLIVCPTSVLRQWAEELKNKVTSKANLSVLVYHGSNRTKDPYVLAKYDVVLTTYSIVSMEVPKQPLVDKDEEKGNSEVHAGLPPTKKRKCPPSRNGKKRLDSALLEASARPLAKVAWFRVVLDEAQSIKNFRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYNTFLSSIKIPINRNPNKGYRKLQAVLKTIMLRRTKGTLLDGEPIITLPPKHVKLKRVDFSSEERDFYSRLEADSRAQFQEYANAGTVKENYVNILLMLLRLRQACDHPLLVKRYDSNTLWRSSVDIAKKLPWEKRTSLLKCLESSLSLCGICNDSPEDAVVSACGHVFCNQCISEHLTGDDNQCPTTNCKAQLIMSSVFSRATLSCSLSDQASNSLVGCSGSEVEGYGPCSQSRPSDSSKIKAALEVLNSLCKPQVNASKNISMQINSDEHGDCHGNSSDCNKVKSLKDFPESQKVSDGSSNDLIVREKAIVFSQWTRMLDLLEACLKNSSIQYRRLDGTMSVAARDKAVKDFNTLPEVTVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQQKKRKMVASAFGEDETGGRQSRLTVDDLKYLLLVAAEVRKQQTGHLLTNTDSNRRGSGDD 1361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g2233 1361 SUPERFAMILY RING/U-box 1020 1064 - -
Acco06g2233 1361 Gene3D - 1073 1355 IPR027417 -
Acco06g2233 1361 SMART helicmild6 1194 1277 IPR001650 -
Acco06g2233 1361 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 914 1334 IPR027417 -
Acco06g2233 1361 MobiDBLite consensus disorder prediction 763 793 - -
Acco06g2233 1361 Pfam Helicase conserved C-terminal domain 1179 1277 IPR001650 -
Acco06g2233 1361 SMART ring_2 1022 1060 IPR001841 -
Acco06g2233 1361 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 679 766 - -
Acco06g2233 1361 CDD SF2_C_SNF 1180 1287 - -
Acco06g2233 1361 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 500 1333 - -
Acco06g2233 1361 SMART ultradead3 588 885 IPR014001 -
Acco06g2233 1361 Pfam SNF2-related domain 612 983 IPR000330 GO:0005524|GO:0140658
Acco06g2233 1361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1007 1072 IPR013083 -
Acco06g2233 1361 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 577 906 IPR027417 -
Acco06g2233 1361 Gene3D - 795 919 IPR038718 -
Acco06g2233 1361 Gene3D - 564 659 IPR038718 -
Acco06g2233 1361 ProSiteProfiles Zinc finger RING-type profile. 1022 1061 IPR001841 -
Acco06g2233 1361 CDD DEXDc_SHPRH-like 592 906 - -
Acco06g2233 1361 ProSitePatterns Zinc finger RING-type signature. 1037 1046 IPR017907 -
Acco06g2233 1361 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 607 868 IPR014001 -
Acco06g2233 1361 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1173 1330 IPR001650 -
Acco06g2233 1361 Gene3D - 678 768 IPR038718 -
Acco06g2233 1361 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 789 918 - -
Acco06g2233 1361 Pfam Zinc finger, C3HC4 type (RING finger) 1022 1059 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g2233 Acco-ChrAcco06 17604188 17613106 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g2233 475 1334 RAD5 or RAD16-like Gene Family AT1G61140 59.932 0.0 960
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Acco06g2233 SNF2_N 3.2e-69 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco06g2233 06 17604188 17613106 Acco06g2233 06 17604188 17613106 CCT