Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g2188 ATGTCTGACGCTGAAAATCAAACCTCTTCGAAAAATGGCGATCGTCATGGGTCAAAGCCTGACAGGGGCCACCGCGACAAGCCCAATTCTCATGGATCTGATCATGAGAGGCGAAGGGTGAGAAAGCGAGATGGAGAGACAAAATCTTATCATGCAGACGATCACAAGGAGTTTAAAAATGGAGGCTTTAGAAGAAAAGGCGGTTATGACAATTATGATCGTCATCAGAACAGTGATTATGACAGACATCGTGGTCATGTTCGAGATGAAGAAATGAGGCACAAATATGGTAGACGATCAAGTTACAGATCCAAGCGGGAATCTAGATCTTGCTCCAGATCCCCTCCTCCTTCAGAAAGCAAAAGGATAAGTGGTTTTGACATGGCACCACCGTCTGCTGCTGGAGTACCTGCTGCTGCTGGGCAAATTCCGGGGATCACTCATCCAGTAACTCTGCAGCATGTGCCATCATTTGGGACGTCACAGGCTGGAGCACTTTCCTTGATGTCAGTTCAACCTATGATGCAGCAGGCTACAAGGCATGCACGACGAGTTTATGTTGGTGGGCTTCCCCCTTTTACTAATGAACAGGCAGTTGCAGCATTCTTCAGTCATGTTATGGCAGCTATTGGAGGGAATTCTGCTGGTGCAGGTGATTCTGTTGTCAATGTTTACATTAATCACGAGAAGAAATTTGCCTTTGTGGAGATGAGAACTGTTGAAGAAGCTAGCAATGCAATGGCATTAGATGGAATAATATTTGAGGGAGTTGCTGTGAGGGTCCGTAGGCCTACAGACTATAATCCTTCAGTCGCTGCTGCTCTAGGTCCAAGCCAACCAAGTCCAAACCTTGATTTATCTGCTGTTGGACTTGTTGCAGGTGCAATTGGTGGAACTGAGGGACCTGATCGCATCTTTGTCGGTGGGCTACCATACTACTTTACTGAAGAACAAATAAAAGAATTACTCCAAGCTTTTGGACCTCTCAGAGCTTTTGATCTAGTTAGAGATAAAGACACAGGAAATTCTAAAGGATATGGTTTCTGCTTCTATCAGGATCCAGCTGTAACGGACATTGCTTGTGCCTCTCTGAATGGCCTTAAAATGGGTGACAAAACACTGACCGTTCGGCGTGCCACAGTCAGCGTACAGTCTAAAACAGAACAGGAGAATATCCTTGCACAGGCACAACAGCGTATTGCTATTCAGAAAATGGCCATGGAAGCTGGCGGGCTAAATATTCCAGGAGTGGAAAGCGCATTAACCAAGCTTAATGAAAATGCTACCAAAGTTTTATGCTTAACCGAGGCCATTACTGCGGATCAACTACAGGACGATGAAGAGTACGGAGAAATATTGGAAGACATGCGGGATGAATGCTGCAAATTTGGGACCTTGATAAATGTTGTTATCCCACGTCCAAAAGACGGCATCGACGAGGCTTCCCCGGGAGTTGGAAAGGTGTTCTTGGAATATTCTGATACTAGTGGAAGCTTGGCTGCAAAAAATGCACTAAATGGGAGGAAATTTGGTGGCAACGTTGTGAGCGCCTTCTATTATGCTGAAGAAAAATATCATAGCATGGAGTATGATGATGTATAA 1602 0.4513 MSDAENQTSSKNGDRHGSKPDRGHRDKPNSHGSDHERRRVRKRDGETKSYHADDHKEFKNGGFRRKGGYDNYDRHQNSDYDRHRGHVRDEEMRHKYGRRSSYRSKRESRSCSRSPPPSESKRISGFDMAPPSAAGVPAAAGQIPGITHPVTLQHVPSFGTSQAGALSLMSVQPMMQQATRHARRVYVGGLPPFTNEQAVAAFFSHVMAAIGGNSAGAGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPSVAAALGPSQPSPNLDLSAVGLVAGAIGGTEGPDRIFVGGLPYYFTEEQIKELLQAFGPLRAFDLVRDKDTGNSKGYGFCFYQDPAVTDIACASLNGLKMGDKTLTVRRATVSVQSKTEQENILAQAQQRIAIQKMAMEAGGLNIPGVESALTKLNENATKVLCLTEAITADQLQDDEEYGEILEDMRDECCKFGTLINVVIPRPKDGIDEASPGVGKVFLEYSDTSGSLAAKNALNGRKFGGNVVSAFYYAEEKYHSMEYDDV 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g2188 533 CDD RRM1_U2AF65 182 264 - -
Acco06g2188 533 SUPERFAMILY RNA-binding domain, RBD 87 263 IPR035979 GO:0003676
Acco06g2188 533 CDD RRM3_U2AF65 429 517 - -
Acco06g2188 533 SMART rrm1_1 304 377 IPR000504 GO:0003723
Acco06g2188 533 SMART rrm1_1 437 518 IPR000504 GO:0003723
Acco06g2188 533 SMART rrm1_1 184 262 IPR000504 GO:0003723
Acco06g2188 533 FunFam U2 snRNP auxiliary factor large subunit 178 279 - -
Acco06g2188 533 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 25 530 IPR006529 GO:0003723|GO:0005634|GO:0006397
Acco06g2188 533 FunFam U2 snRNP auxiliary factor large subunit 426 531 - -
Acco06g2188 533 MobiDBLite consensus disorder prediction 1 140 - -
Acco06g2188 533 Gene3D - 425 531 IPR012677 -
Acco06g2188 533 Gene3D - 297 399 IPR012677 -
Acco06g2188 533 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 266 IPR000504 GO:0003723
Acco06g2188 533 SUPERFAMILY RNA-binding domain, RBD 304 524 IPR035979 GO:0003676
Acco06g2188 533 FunFam U2 snRNP auxiliary factor large subunit 280 392 - -
Acco06g2188 533 PANTHER RNA-BINDING PROTEIN 9 530 - -
Acco06g2188 533 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 381 IPR000504 GO:0003723
Acco06g2188 533 Gene3D - 178 279 IPR012677 -
Acco06g2188 533 CDD RRM2_U2AF65 303 379 - -
Acco06g2188 533 MobiDBLite consensus disorder prediction 9 112 - -
Acco06g2188 533 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 305 374 IPR000504 GO:0003723
Acco06g2188 533 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 256 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g2188 Acco-ChrAcco06 16847511 16857661 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g2188 305 511 Eukaryotic Initiation Factors Gene Family AT1G71770 24.286 7.15e-08 53.5