Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g2170 ATGGCTGAAAGATTAGCGGAGCCGAAGAGGATCGACAATAACACAGCCGTGGCCGCCTCCAAAGCCTCTGGCGGCCGACGGTGTGTGGCGCCATTTCTGTTGAAGACGTATGATTTGGTGGAAGAAGGCGGAGAAGCAGAAGGAGGAGAAGGGAAGAGATCAGTAATAGTATCATGGAATGAGAAAGGAGATGGTTTTGTAGTGTGGCATCCTGCAGAATTCTCGAAGCTCATATTGCCAACATACTTCAAGCACAACAACTTCTCCAGCTTCATCCGCCAATTGAACACCTACGGTTTTAAGAAAGTGTCATCAGAGAGATGGGAATTCAAGCAGGAGAAATTTCAGAGAGGGAAGAAGAAGTTGCTGGCAGAGATAACGAGGAAGAAGTGTGAGCCAAGTGTTTTCCCTTCATACTTGAAGTCTTGTTCTGAGGAAACCAGTAATCATGATCATCATCAATTACTGCTACAGCAGAATCACCAACTGAAGAAGCAGAACCAGCACTTGAAATCACAAGTCACTCACTTCAAACAATTACAAACCAGGTTGTTTCATTGTGTCTCTCAGTATATGGGCACCTCCCCAGAATAA 594 0.4529 MAERLAEPKRIDNNTAVAASKASGGRRCVAPFLLKTYDLVEEGGEAEGGEGKRSVIVSWNEKGDGFVVWHPAEFSKLILPTYFKHNNFSSFIRQLNTYGFKKVSSERWEFKQEKFQRGKKKLLAEITRKKCEPSVFPSYLKSCSEETSNHDHHQLLLQQNHQLKKQNQHLKSQVTHFKQLQTRLFHCVSQYMGTSPE 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g2170 197 SUPERFAMILY "Winged helix" DNA-binding domain 29 129 IPR036390 -
Acco06g2170 197 Coils Coil 153 173 - -
Acco06g2170 197 SMART hsfneu3 28 129 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco06g2170 197 ProSitePatterns HSF-type DNA-binding domain signature. 79 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco06g2170 197 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 24 188 IPR027725 -
Acco06g2170 197 PRINTS Heat shock factor (HSF) domain signature 91 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco06g2170 197 PRINTS Heat shock factor (HSF) domain signature 78 90 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco06g2170 197 FunFam Heat stress transcription factor A-6b 25 130 - -
Acco06g2170 197 Pfam HSF-type DNA-binding 32 129 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco06g2170 197 Gene3D - 25 130 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g2170 Acco-ChrAcco06 16680424 16683250 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g2170 16 196 HSF AT5G62020 35.648 1.09e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Acco06g2170 HSF_DNA-bind 1.1e-29 CL0123