Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g2169 ATGGACACGCCACAACTTCTCAACAAATATGAGTTGTTTATTGGCATCATACAACGAGCGCCGAAACAGAAGCTGGTACTGCATGTGAACGGAGTGCCACGTCACAATGAGGTGGGCCCACAGTTTCGTCCAATGAGTGAAGTCTATTCCGGAAATGAAAGACGGTTCTATGCTCTGGATTTTTCTTCTTCTGTGATTGAATGTCCTAGATTGCTAGATCTTATGTTTTCCATTTCTTTTTTGATCTTGGCAACATTCGGTCAGGGAGGTTCTGATAGGGGGGCTGATCCATCTGGCATTTGTAATGATTCTTTAGTTATGTCATTGTTCATTTATCATCTAATGTTTGAATTGGCTAGAGCACTATATGTCTCTGCCATTAGCCATAAGATCCTGAGAGTTCTTTGGATAATTGAATATATGGGCATTTGTCTTTTACTCTTGGCGATTGGACCTTTGACAATTAGAATGATGCCATTTCATTATAGTGCATTTTGGGTTAAAGTGGCACTGTTGCACTACATTTCACAAGAATGGAAAAGCATTCCAAGTTCCATGACGAAAGAGACTGGAAATCAAGATGATTCTTTCGATTGCAACATTTGCTTTGACTTTGCTATTGAACCTGTGGTCACCCTCTGTGGCCACCTCTATTGCTGGCCCTGCATCTACAAGTGGCTCCATGTCCAAAGTGCTTCTCTTGGATCTGATGAGCACCCACAATGCCCGGTCTGCAGGGCTGATATATGTCCCACCACCTTGGTCCCCCTATATGGCCGGGGCCAAACCCCGGCTCCTCCCGAGCAAGACACAAAGGCGTCATGTGAGATTTTGGTACCACCAAGACCACGAGCTTTTGGCGCTCAAGCTCTGATGTTAGCATCAGCATCATCATCATCTCAAGGTGGTCATCATCAGCGTCATCCTTATCATTATCCTCATCACAGTCATCAACATTTCAGCTCTCCTCTGTACCAAAGGGTGGAGGATGCCTCATCACAAGTGTTAAATCTCAGTGCTACTCTTACACCTCAAGGATTTCACCACCCTGTGGCTGGGATGGTTTACGCCACGGTGTTTGGCAGCCCAGAAAATTTATACGCATACCCGAATTCTTATCAGCAGATGGGCAGTAGCAGCCCAAGACTGAGAAGGCAGGTGATGCAAGCAGACAAATCATTGAACAGAATCTCAATCTTCCTCTTTTGCTGTTTTATTTTATGTCTCATTGTATTTTGA 1239 0.4439 MDTPQLLNKYELFIGIIQRAPKQKLVLHVNGVPRHNEVGPQFRPMSEVYSGNERRFYALDFSSSVIECPRLLDLMFSISFLILATFGQGGSDRGADPSGICNDSLVMSLFIYHLMFELARALYVSAISHKILRVLWIIEYMGICLLLLAIGPLTIRMMPFHYSAFWVKVALLHYISQEWKSIPSSMTKETGNQDDSFDCNICFDFAIEPVVTLCGHLYCWPCIYKWLHVQSASLGSDEHPQCPVCRADICPTTLVPLYGRGQTPAPPEQDTKASCEILVPPRPRAFGAQALMLASASSSSQGGHHQRHPYHYPHHSHQHFSSPLYQRVEDASSQVLNLSATLTPQGFHHPVAGMVYATVFGSPENLYAYPNSYQQMGSSSPRLRRQVMQADKSLNRISIFLFCCFILCLIVF 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g2169 412 SUPERFAMILY RING/U-box 189 252 - -
Acco06g2169 412 CDD RING-HC_AtRMA-like 197 247 - -
Acco06g2169 412 ProSitePatterns Zinc finger RING-type signature. 214 223 IPR017907 -
Acco06g2169 412 ProSiteProfiles Zinc finger RING-type profile. 199 246 IPR001841 -
Acco06g2169 412 SMART ring_2 199 245 IPR001841 -
Acco06g2169 412 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 177 409 IPR045103 GO:0005783|GO:0006511|GO:0061630
Acco06g2169 412 Pfam Zinc finger, C3HC4 type (RING finger) 199 245 IPR018957 GO:0046872
Acco06g2169 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 170 259 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g2169 Acco-ChrAcco06 16667402 16670882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g2169 174 398 C3H Transcription Factor Family AT4G27470 37.826 1.06e-37 135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco06g2169 06 16667402 16670882 Acco06g2169 06 16667402 16670882 ECH