Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g2136 ATGGCCTCAACTCTCCACTGGGACCCCGATAAAATGCTTCAACTTTATATTCTGGATTATATGAGGAGAAGGGGAATGGATACGACCGCTGAAATTTTCCAAAAGGAATCAGATGTTATTGACGCTCCCGTTGTGATTCGGTCTCCAGAAGGTTTCTTGCATGAATGGTGGTCTGTTTTCTATGACATATATGCCTCAAGGAATCTGAAGCATGAGGACATTGGGCCAGAAGCCTGTAGTTATGTGGAACTTCAAAGGACCAATAGTGGAAGAAGAAATCTCCCTCCTAGAATCCCGCAGCTATCTAAGCAGAGACCTCAACTTCTTCAAATCGACCCCACCACTAACAATATGATGGAGCAATCGGCTGCCTGCCTGTTACCACCGAATGTATATGAGAGAGAGTATCTTGGATGTCTAGCCGAAGATTCTAATCCAAGTTTACAACTTATCAATGCAAAGAGACTGAAGTTTGAGGATAGTGGAATTGGCCTTCAGCCAGGAAGCGATATACCCGCGGACCCCCTGGGAGTTAATGAAGGTCTCAATCTGGTGCTGCTGAATGGATATCCTTTAAATGTACTCACTTCACTTTTGCAAGCACCAAACTATGAGCAACAGTTTCAGGGGTTTGAAACACAAAATCACCAAGCGCTTGCATGTACCTCTAGGAGTCAGACATCCACATGTCTTGGAAAGTCTTCTATATGCATCAGCCAAGATCCACGCACTCCCCTGGTTGAAACTGATTTGTGTAAAGATATGCAGGACTGTACGAATGCAGCAGATGGGAGACCTGTAGATAGAAACATTTTGCCCTTGTCTGATGAGAATGAACATGCTGATCAAGGAACTGGACCTTCCAGGAATCTGAAACTTACTTTTGCGACATGTGATATGAGGAAAGGTTTTTCATTTGAAGAGGTTGGGTGTCTTCACTCAAGCAAAAGCAAAGTTTTGTCCTGCCATTTTTCGTCTGATGGGAAGGTTTTAGCAAGTGCTGGACATGAGAAGAAGGTTTTCGTTTGGAATATGGAAACTTTTGATTGTGTTAGTACTTCAGATGCACATTCACGTCTCATTACTGATGTTCGGTTCAGACCAGGCTCAACCATATTTGCAACATCTTCTGCTGATAAAACTGTAAAAATATGGGATGCGGCCAAAGCAAACGAATCATTGTTTGAGCTTACCGGGCATGCTGAACAAGTAATGTCATTGGACTTCCACCCAAGAAACGTGGACCTTCTTTGCTCCTGCGATAGCAATGGCATAATGCGATTGTGGAATGTCAACCAAGGCGTTTGTGTGCGTATAAATAAGGGAGGCAGCAATCAAGTCAGATTCCAGCCTCGAATTGCCAACTTTTTGGCTGCTGCCGCCGCAAATATTATTAATTTGATTGATATCGAGGATGACAGACTTTTATACAAGCTGAAGGGACATGTTAAAGATGTTATTTCCATTTGTTGGGACGCAACAGGAAACTATCTTGCTTCTGTAAGTGAAGATAGTGCACGTGTGTGGTCCGTTACGTCTGATGGAAAATGCATACAAGTACTGCATTCAAATAGAAACAAGTTTCAATCGTGCATATTTCATCCTGTATATTGTAACCTCTTAATCATTGGTTGCAATCAGTCCCTGGAGTTTTGGATTCCAACTGAGGGCTGTAAATTATGGACTCATACTGCTCACAAGGACGTAATCGCTGGACTAGGAGCTTCACCAGAAAATCAAATGATGGCCTCAGCTAGCCATGATCATACCGTGAAACTTTGGAAATAA 1788 0.4284 MASTLHWDPDKMLQLYILDYMRRRGMDTTAEIFQKESDVIDAPVVIRSPEGFLHEWWSVFYDIYASRNLKHEDIGPEACSYVELQRTNSGRRNLPPRIPQLSKQRPQLLQIDPTTNNMMEQSAACLLPPNVYEREYLGCLAEDSNPSLQLINAKRLKFEDSGIGLQPGSDIPADPLGVNEGLNLVLLNGYPLNVLTSLLQAPNYEQQFQGFETQNHQALACTSRSQTSTCLGKSSICISQDPRTPLVETDLCKDMQDCTNAADGRPVDRNILPLSDENEHADQGTGPSRNLKLTFATCDMRKGFSFEEVGCLHSSKSKVLSCHFSSDGKVLASAGHEKKVFVWNMETFDCVSTSDAHSRLITDVRFRPGSTIFATSSADKTVKIWDAAKANESLFELTGHAEQVMSLDFHPRNVDLLCSCDSNGIMRLWNVNQGVCVRINKGGSNQVRFQPRIANFLAAAAANIINLIDIEDDRLLYKLKGHVKDVISICWDATGNYLASVSEDSARVWSVTSDGKCIQVLHSNRNKFQSCIFHPVYCNLLIIGCNQSLEFWIPTEGCKLWTHTAHKDVIAGLGASPENQMMASASHDHTVKLWK 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g2136 595 Gene3D - 290 441 IPR015943 GO:0005515
Acco06g2136 595 CDD WD40 308 595 - -
Acco06g2136 595 ProSiteProfiles Trp-Asp (WD) repeats profile. 312 353 IPR001680 GO:0005515
Acco06g2136 595 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 595 IPR044716 GO:0003714
Acco06g2136 595 Pfam WD domain, G-beta repeat 559 595 IPR001680 GO:0005515
Acco06g2136 595 Pfam WD domain, G-beta repeat 349 386 IPR001680 GO:0005515
Acco06g2136 595 Pfam WD domain, G-beta repeat 313 344 IPR001680 GO:0005515
Acco06g2136 595 Pfam WD domain, G-beta repeat 393 430 IPR001680 GO:0005515
Acco06g2136 595 Pfam WD domain, G-beta repeat 475 510 IPR001680 GO:0005515
Acco06g2136 595 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 354 386 - -
Acco06g2136 595 ProSiteProfiles LIS1 homology (LisH) motif profile. 9 41 IPR006594 GO:0005515
Acco06g2136 595 ProSiteProfiles Trp-Asp (WD) repeats profile. 354 386 IPR001680 GO:0005515
Acco06g2136 595 ProSiteProfiles Trp-Asp (WD) repeats profile. 563 595 IPR001680 GO:0005515
Acco06g2136 595 ProSiteProfiles Trp-Asp (WD) repeats profile. 397 439 IPR001680 GO:0005515
Acco06g2136 595 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 397 434 - -
Acco06g2136 595 SUPERFAMILY WD40 repeat-like 305 595 IPR036322 GO:0005515
Acco06g2136 595 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 563 595 - -
Acco06g2136 595 PRINTS G protein beta WD-40 repeat signature 582 595 IPR020472 -
Acco06g2136 595 PRINTS G protein beta WD-40 repeat signature 373 387 IPR020472 -
Acco06g2136 595 PRINTS G protein beta WD-40 repeat signature 331 345 IPR020472 -
Acco06g2136 595 Gene3D - 442 595 IPR015943 GO:0005515
Acco06g2136 595 SMART WD40_4 347 386 IPR001680 GO:0005515
Acco06g2136 595 SMART WD40_4 514 553 IPR001680 GO:0005515
Acco06g2136 595 SMART WD40_4 556 595 IPR001680 GO:0005515
Acco06g2136 595 SMART WD40_4 390 430 IPR001680 GO:0005515
Acco06g2136 595 SMART WD40_4 472 510 IPR001680 GO:0005515
Acco06g2136 595 SMART WD40_4 305 344 IPR001680 GO:0005515
Acco06g2136 595 SMART Lish 9 41 IPR006594 GO:0005515
Acco06g2136 595 Pfam LisH 11 37 IPR006594 GO:0005515
Acco06g2136 595 ProSitePatterns Trp-Asp (WD) repeats signature. 417 431 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g2136 Acco-ChrAcco06 16200657 16207018 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g2136 289 511 U-box Gene Family AT2G33340 24.675 2.99e-16 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Acco06g2136 WD40 0.0008 CL0186