Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Acco06g2127 | ATGCCAGCACAGAAGCGCTTGTTCGACGCTCCAGAAGAGGATGCCTTACACAGCGAGAGGAACCACCATGATAAGCCAGAAGATGGATTGGAGTCCGATCGAAGCCCTTCGGAGAGCGCTGGCGACAAAGAAGAGTTTGTTGTTATTAAATTGTCAGATGTACGCAAGGAAGTTCAGTGTCCTATCTGCCTAGGCATCATTCGTAAAACAAGAACCGTAATGGAATGCCTGCACCGCTTTTGCAGAGAATGTATAGATAAATCCATGCGCCTCGGCAACAATGAGTGCCCTGCCTGCCGCACGCATTGTGCTAGCCGACGCTCACTGAGAGATGACCCAAACTATGATGCTTTAATTGCTGCTCTCTATCCAGATATAGACAAGTATGAGCAGGAGGAATTGGCTCTGCATGAAGATGAAAAAGCTCGCAATAAGCAGATCCAAGAATCTATTGCTCAGACTCTTCAACGACAAGCAGAAGCGCTGGGTAAAAAACGCAATCCCAAAGCAATTACAAGGAGGTCACAAGGTAACTATCGAACTCCACATTCAAGGGCAAGAAGGAATAGTAGAAGTACGATTGAACTTCAAGGATCTGATGACACTGAGGACATGAATGATGATGATGGGGCTAAGGGTTCTTCTTCTGGTGATGAGCTGATAGAAATCAGATCAAAAAGATGTAAAAGAGGGCCAGAAGCACAATTTCCTCTGCTCTCTGCAACCACTGCTGCAGATGGTGCCAGTGATGAAAATGCTCCTGAAGTGAGTAGAGAATTCTTGAGTCCTTCTAGTACCCTTGCCTGGGGAAAAAATGGTCACCGGAGTCACACCCGAGTTAATGGCAAGAATGCCAGAAATAGTCGCATTGCCAAATTGATTGATAATCTCCGTAGCCTGGAAGAAAATGATGATGAGTTGGGTGTCTGCCTCATGCTTGTGCCTTATGACGAGAAAAGGACACCAAGTTTGCAGCAGCCATACCTCTGCTGCAGACCTACATTGTCCGTCAGGCACCTGTGCCAGTATGTTGCCCTTCAAACAGCTGTACAGGTTGATGAGGTTGAGATATGCTTGGTAAAAGAGCAGCAAGCCAACATTATTAGAGCTGCAGGCTCAGTAGATCCATGCACAGACAATTTGCAAGTGTTGAGAGAGCAGGAAACTTTGGCCGAACTTAAACCTGATAATTTTAGCTGTGGCCATCTGCTTATGGCATATAAGAGGAAACTGTTGAACTCAACTGCGGCTAGTTTGACGTGA | 1263 | 0.4616 | MPAQKRLFDAPEEDALHSERNHHDKPEDGLESDRSPSESAGDKEEFVVIKLSDVRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIDKYEQEELALHEDEKARNKQIQESIAQTLQRQAEALGKKRNPKAITRRSQGNYRTPHSRARRNSRSTIELQGSDDTEDMNDDDGAKGSSSGDELIEIRSKRCKRGPEAQFPLLSATTAADGASDENAPEVSREFLSPSSTLAWGKNGHRSHTRVNGKNARNSRIAKLIDNLRSLEENDDELGVCLMLVPYDEKRTPSLQQPYLCCRPTLSVRHLCQYVALQTAVQVDEVEICLVKEQQANIIRAAGSVDPCTDNLQVLREQETLAELKPDNFSCGHLLMAYKRKLLNSTAASLT | 420 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Acco06g2127 | 420 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
| Acco06g2127 | 420 | Coils | Coil | 137 | 157 | - | - | |
| Acco06g2127 | 420 | MobiDBLite | consensus disorder prediction | 7 | 42 | - | - | |
| Acco06g2127 | 420 | Pfam | Zinc finger, C3HC4 type (RING finger) | 59 | 99 | - | - | |
| Acco06g2127 | 420 | MobiDBLite | consensus disorder prediction | 264 | 284 | - | - | |
| Acco06g2127 | 420 | CDD | RING-HC_RING1-like | 57 | 122 | - | - | |
| Acco06g2127 | 420 | Coils | Coil | 283 | 303 | - | - | |
| Acco06g2127 | 420 | SUPERFAMILY | RING/U-box | 47 | 131 | - | - | |
| Acco06g2127 | 420 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 8 | 130 | IPR013083 | - | |
| Acco06g2127 | 420 | SMART | ring_2 | 60 | 99 | IPR001841 | - | |
| Acco06g2127 | 420 | MobiDBLite | consensus disorder prediction | 159 | 219 | - | - | |
| Acco06g2127 | 420 | ProSiteProfiles | Zinc finger RING-type profile. | 60 | 100 | IPR001841 | - | |
| Acco06g2127 | 420 | PANTHER | OS11G0578200 PROTEIN | 15 | 410 | IPR044592 | - | |
| Acco06g2127 | 420 | ProSitePatterns | Zinc finger RING-type signature. | 76 | 85 | IPR017907 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Acco06g2127 | Acco-ChrAcco06 | 16098267 | 16102454 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Acco06g2127 | 58 | 179 | C3H Transcription Factor Family | AT2G30580 | 29.008 | 1.48e-06 | 48.1 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Acco06g2127 | 06 | 16098267 | 16102454 | Acco06g2127 | 06 | 16098267 | 16102454 | CCT |