Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g2124 ATGGAGTCCGAGGGGCAAGAGAGGAGCTTGAGGCTAGTTTCTTCTGTAGCAGTAAACCCTGATACAGTGTCTGCAGAAAATAATGACTTATGTAAGGTTCTTACAATGGAAAAGGAAGATTTTCAGCTGGAACATGTGACTCGAAGCAGTCCAAATTCAAGAATTAATGTGGGTTCTGCTGAAGATGATAAACATCAAGGATTAGATGTTGCTAATGAAAGTAATGGATCCCCTCTACAATGTAAAACCTTGGAAGCATACAACGAACCAAGTTGTGATAGCAAAGTTTACTTATGTGGTGCTAAAGAGTCTGGGACAGTCAAGTCATCCAGTGATGTTGCTAATGAAAGTAATGGATCCCCTCTACAATGTAAAACCTTGGAAGCATACAATGAACCAAGTTGTGATAGCAAAGTTTACTTATGTGGTGCTAAAGAGTCTGGGACAGTCAAGTCATCCAGTGATGTTGCTAATGAAAGTAATGGATCCCCTCTACAAAGTAAAACCTTGGAAGCATACAATGAACCAAGTTGTGATAGCAAAGTTTACTTATGTGGTGCTAAAGAGTCTGGGACAGTCAAGTCATCCAGTGATGCTGAAAAAGATGTGGCTACTGACATCCAGCGGAGAGGCTGCTCTGTTGAGAATGCTTGCATTAGCACACAGAATTCTATAAACAAAATAAAGCAATTGGACACACATTCGGGGGATGAGATGAAGCAAATGACATCAAGGTCTGGTCTTTATGGTTCATTATTTTCCAGATTTACTTCCCCTGATATGAGGACTCAAAGTCTTTCTCCCACTGCCGAGATGAAAGATATAAACAAACGGCCAGCGATTATATGCAGCTTTTTTGCTAAAGGATGGTGTATCAGAGGTAGTTCATGTAGGTTTCTTCATATAAAAGATAATGTAAATAACACTGGCCAGCAGGCCGAAGGAGACTTGTTTTCTACAAATTGCAAGAGAGAAAGGCAATTGGAGGAAGGTCTGAGGGGTCATGCTGAGACATCAGGAATGGCTGATGCTCCAGTTCCATTGGCTGCTTCATTGGTGAGCTCTTCTTTGCATTCTTCTGAATTTTTGGTAAAAGAGACGATCCAGGATGAACAAGAAGCAAGCCTGAGTCAGCGTCCATCTCAAGATAAACAGAAGTTTCCATTACTTTCAAAAGAGAACTTATCATCTAAGAATCATGTCTTATCAATTGGTAGAGATAGTTCTGCATCAAGGGATGGCCCTGAAAATAGATCTATATTTAATGCATCAAACAGCTACTTCAGCAGGAATCTCTCTTCTTATCCATCCTGTGTGGAGAGATTAGCTCCCATTGAAAACAAATATGCTTCCCAAGCTTCAGCTCCATCAAGTTATTCAATGTCTTCAAATTTATCTGTTGGTGCAAGTTCTTTGGATGCTCAAAAGCTGTTGAAAAGTGGCAAAGAATATCATGCCCCTAGATCCACTTTCTTGGGTTCGGAATGGGAGGAGATGCCTCTAACTAGTCCATCTGGAGTTTGGCTACATGCCACTGGATATAAAAGAAAAATATCTTCTTATGATTGGGAGCCATCTGTACCTTTTCGACCATCATTTTTTATTACTTCAGCTGGTATATCATCTTCTGGAGATATGTATGACCCATTTCATCCTTGTGTTGAGATAGCCAATATAGGAGATGGATCCCTGAAAGCTTCCTTTTTCACTCACGGGCCTCCCATCCAGTCTTCATCTCAGGTGCAAACGTATGGTGATTGTGCTGTAGCTGGGGACAAGGTGGAAGATGTTATCGACGACAAGAGTTCTGTATCTTCTCATCACAGATTTTTTGAGAATGAGGCAAACAAGCATTGTGCTCCTTCAGAAGAAGATGGCTGTGCACATGAAACAGAGACAACAGCCAGGAACTATCTGAACTCTCATAATGGTAAAGCAAGCATTGGAGAAAATAACGTTGTTGTTGAAGACAATATAAAAACTGAAGTTGGACAAACACAGAATGGTGCAAGATATCAAGGTGAAGGATCGGGACTGAAAAAGAGAAGAGTAGATAAGGCTCAGAAAAACAATGAAATGAATGTTGATTTTCAGATGGATGGCAATATGCGGAATGATTCGAAGGCTGTAAAAAATTTTCGTGCTGCTCTTGTCGATTTAGTGAAAGAGTTGTTAAAACCATCTTGGCAAGAGGGTTATCTCAGCAAGGATGCACATAATAAGATAGTTAAGAAATCGGTTGACAAAGTTATTAGCACCCTACAACCCCACCAGATTCCAACCACCGTAGATGCAGTCAAACACTATATTTCTTCATCTCGGTTAAAAATTGGAAAGCTTGTTGATGGATATGTCAATAAATACAGCAGCAAGTCTTGA 2379 0.4031 MESEGQERSLRLVSSVAVNPDTVSAENNDLCKVLTMEKEDFQLEHVTRSSPNSRINVGSAEDDKHQGLDVANESNGSPLQCKTLEAYNEPSCDSKVYLCGAKESGTVKSSSDVANESNGSPLQCKTLEAYNEPSCDSKVYLCGAKESGTVKSSSDVANESNGSPLQSKTLEAYNEPSCDSKVYLCGAKESGTVKSSSDAEKDVATDIQRRGCSVENACISTQNSINKIKQLDTHSGDEMKQMTSRSGLYGSLFSRFTSPDMRTQSLSPTAEMKDINKRPAIICSFFAKGWCIRGSSCRFLHIKDNVNNTGQQAEGDLFSTNCKRERQLEEGLRGHAETSGMADAPVPLAASLVSSSLHSSEFLVKETIQDEQEASLSQRPSQDKQKFPLLSKENLSSKNHVLSIGRDSSASRDGPENRSIFNASNSYFSRNLSSYPSCVERLAPIENKYASQASAPSSYSMSSNLSVGASSLDAQKLLKSGKEYHAPRSTFLGSEWEEMPLTSPSGVWLHATGYKRKISSYDWEPSVPFRPSFFITSAGISSSGDMYDPFHPCVEIANIGDGSLKASFFTHGPPIQSSSQVQTYGDCAVAGDKVEDVIDDKSSVSSHHRFFENEANKHCAPSEEDGCAHETETTARNYLNSHNGKASIGENNVVVEDNIKTEVGQTQNGARYQGEGSGLKKRRVDKAQKNNEMNVDFQMDGNMRNDSKAVKNFRAALVDLVKELLKPSWQEGYLSKDAHNKIVKKSVDKVISTLQPHQIPTTVDAVKHYISSSRLKIGKLVDGYVNKYSSKS 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g2124 792 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 282 301 IPR000571 GO:0046872
Acco06g2124 792 SMART c3hfinal6 277 303 IPR000571 GO:0046872
Acco06g2124 792 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 35 789 - -
Acco06g2124 792 Gene3D - 269 328 - -
Acco06g2124 792 MobiDBLite consensus disorder prediction 371 390 - -
Acco06g2124 792 ProSiteProfiles Zinc finger C3H1-type profile. 277 304 IPR000571 GO:0046872
Acco06g2124 792 SUPERFAMILY CCCH zinc finger 277 301 IPR036855 GO:0046872
Acco06g2124 792 MobiDBLite consensus disorder prediction 398 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g2124 Acco-ChrAcco06 16087224 16089900 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Acco06g2124 zf-CCCH 7.2e-06 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco06g2124 06 16087224 16089900 Acco06g2124 06 16087224 16089900 ECH