Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g2116 ATGGCTCCCAGGGAGAAGTCCGCCGCCGTCAAATCTAACGCTCACATCGGTCTCAAGGAGGTGCATTTCAGGGGCGTTAGGAAGAGGCCCTGGGGAAGATACGCTGCTGAGATTAGAGATCCCGGCAAAAAGAGCCGTGTTTGGCTCGGCACTTTTGATACCGCTGAGGAGGCTGCGCGTGCCTATGACGCTGCCGCTCGGGACTTCCGTGGGGCTAAGGCCAAAACCAACTTCCCTTTCCCTTCCGACAATGTCAACCATCAAACCAGTCCGGCTCAGAGTAGTACGGTCGAATCTTCAAGCCGTGACGGTGAGCCTGCTCGTAAGACGGATTCCTCGTCGTTCGACCTCAACTTGTCCTCCCATGCCGGGGGATCCGTCACCAGCTCCGTCCGCTTCCCTTTCCAGCAGCAGTTCCCGTTGCCGGCTGCCGTGTTTCCCGGTACTCTTCCGCAGGTGAATCAGGCGCTTTACTTCGACGCGGTCTTCCGCGCGAGCCTGGCGGCGGGTCAGGCCTTCCATGGAGTCGTGTTCGATCAGCACCGTTCCCCGGCGGGTGAGTATCGCTCCGGCGGAGTGCAGAGCGATTCCGATTCCTCCACGGTGATCGATCTAAACGTCCGTGATGACGAGAAGACTCCTCGGAAGGAGCTGGATCTCGATCTCAACGAACCCCCTCCGGAGGAAATGGCGTGA 696 0.5934 MAPREKSAAVKSNAHIGLKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAARDFRGAKAKTNFPFPSDNVNHQTSPAQSSTVESSSRDGEPARKTDSSSFDLNLSSHAGGSVTSSVRFPFQQQFPLPAAVFPGTLPQVNQALYFDAVFRASLAAGQAFHGVVFDQHRSPAGEYRSGGVQSDSDSSTVIDLNVRDDEKTPRKELDLDLNEPPPEEMA 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g2116 231 MobiDBLite consensus disorder prediction 187 231 - -
Acco06g2116 231 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Acco06g2116 231 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Acco06g2116 231 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
Acco06g2116 231 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Acco06g2116 231 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 13 186 - -
Acco06g2116 231 MobiDBLite consensus disorder prediction 203 223 - -
Acco06g2116 231 MobiDBLite consensus disorder prediction 77 117 - -
Acco06g2116 231 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Acco06g2116 231 MobiDBLite consensus disorder prediction 79 101 - -
Acco06g2116 231 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Acco06g2116 231 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Acco06g2116 231 CDD AP2 22 79 IPR001471 GO:0003700|GO:0006355
Acco06g2116 231 FunFam Ethylene-responsive transcription factor 2 21 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g2116 Acco-ChrAcco06 15979585 15980280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g2116 19 227 AP2-EREBP Transcription Factor Family AT5G44210 41.784 1.19e-40 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco06g2116 AP2 1.2e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco06g2116 06 15979585 15980280 Acco06g2116 06 15979585 15980280 ECH
Acco01g3256 01 49830792 49831721 Acco06g2116 06 15979585 15980280 ECH